Co-expression analysis

Gene ID	Contig7377_s_at
Gene name
Homology with Arabidopsis	Similar to At2g25810: TIP4 (HF=1e-1)
Module size	8 genes
NF	0.41
%ile	57.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.64	80.9	0.85	Contig7377_s_at	Contig7377	-	-	1e-1	At2g25810	TIP4	O.I.	H.G.	S.X.	Please select
0.71	87.1	0.85	Contig18672_at	Contig18672	-	-	2e+0	At3g44750	HDA3 (HISTONE DEACETYLASE 3)	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.86	Contig13896_at	Contig13896	-	-	5e-1	At5g49300	zinc finger (GATA type) family protein	O.I.	H.G.	S.X.	Please select
0.47	62.2	0.85	Contig2177_at	Contig2177	-	-	6e-10	At4g12800	PSAL (photosystem I subunit L)	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.85	Contig3246_at	Contig3246	-	-	3e-4	At2g27710	60S acidic ribosomal protein P2 (RPP2B)	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.85	HV09A21u_at	HV09A21u	-	-	3e+0	At1g47750	PEX11A (PEROXIN 11A)	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.85	Contig7305_at	Contig7305	-	-	2e-1	At2g42590	GRF9 (GENERAL REGULATORY FACTOR 9)	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.85	Contig7304_s_at	Contig7304	-	-	2e+0	At5g43110	APUM14 (Arabidopsis Pumilio 14)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.5	99.4	GSM310864	lina_with_aphids_3	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
8.4	98.8	GSM310867	lina_without_aphids_3	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
8.2	98.7	GSM310865	lina_without_aphids_1	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
7.9	98.7	GSM310863	lina_with_aphids_2	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
6.2	98.0	GSM310866	lina_without_aphids_2	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
4.8	97.0	GSM310455	lina_with_aphids_1	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
4.6	96.8	GSM372957	genotype: Mla6 - pathogen isolates: K1 - time: 0 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.7	95.5	GSM160831	7% SWC rep1	GSE6990	Barley drought stress
3.6	95.3	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.5	95.1	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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