Co-expression analysis

Gene ID	Contig7360_at
Gene name
Homology with Arabidopsis	Similar to At4g19620: unknown protein (HF=3e+0)
Module size	6 genes
NF	0.53
%ile	73.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	66.9	0.97	Contig7360_at	Contig7360	-	-	3e+0	At4g19620	unknown protein	O.I.	H.G.	S.X.	Please select
0.71	87.1	0.97	Contig2343_s_at	Contig2343	-	-	1e+0	At5g26010	catalytic/ protein serine/threonine phosphatase	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.97	Contig11477_at	Contig11477	-	-	8e-5	At1g79040	PSBR (photosystem II subunit R)	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.96	Contig10661_at	Contig10661	-	-	2e+0	At3g15680	zinc finger (Ran-binding) family protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.96	Contig10945_at	Contig10945	-	-	3e+0	At5g24110	WRKY30	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.96	Contig1512_at	Contig1512	-	-	0	At5g12250	TUB6 (BETA-6 TUBULIN)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.4	99.2	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
9.2	99.0	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.3	98.1	GSM440972	Stressed awn_Rep1	GSE17669	Gene expression in the barley spike during drought stress
5.4	97.5	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.6	96.8	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.3	96.4	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.3	96.4	GSM440973	Stressed awn_Rep2	GSE17669	Gene expression in the barley spike during drought stress
4.3	96.4	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.1	96.2	GSM440974	Stressed awn_Rep3	GSE17669	Gene expression in the barley spike during drought stress
3.8	95.7	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.45249.1.S1_at, orthologous to the query gene, Contig7360_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	76.3	GmaAffx.45249.1.S1_at	At4g19620	-	-	1e-16	At5g15850	COL1 (constans-like 1)	O.I.	H.G.	S.X.	Please select
0.71	87.8	Gma.15778.1.A1_at	At4g19620	-	-	2e-5	At2g30520	RPT2 (ROOT PHOTOTROPISM 2)	O.I.	H.G.	S.X.	Please select
0.67	86.1	GmaAffx.14833.1.S1_at	At4g19620	-	-	5e-3	At5g06320	NHL3	O.I.	H.G.	S.X.	Please select
0.60	80.7	GmaAffx.82835.2.S1_at	At4g19620	-	-	4e+0	At2g06925	PLA2-ALPHA	O.I.	H.G.	S.X.	Please select
0.60	80.7	Gma.15778.2.S1_at	At4g19620	-	-	3e+0	At3g47510	unknown protein	O.I.	H.G.	S.X.	Please select
0.59	79.5	GmaAffx.14833.2.S1_at	At4g19620	-	-	1e-2	At1g02630	equilibrative nucleoside transporter, putative (ENT8)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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