CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig7360_at

Gene name
Homology with Arabidopsis Similar to At4g19620: unknown protein (HF=3e+0)

Module size 6 genes

NF 0.53

%ile 73.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.50 66.9 0.97 Contig7360_at Contig7360 - - 3e+0 At4g19620 unknown protein O.I. H.G. S.X.
0.71 87.1 0.97 Contig2343_s_at Contig2343 - - 1e+0 At5g26010 catalytic/ protein serine/threonine phosphatase O.I. H.G. S.X.
0.60 77.3 0.97 Contig11477_at Contig11477 - - 8e-5 At1g79040 PSBR (photosystem II subunit R) O.I. H.G. S.X.
0.50 66.9 0.96 Contig10661_at Contig10661 - - 2e+0 At3g15680 zinc finger (Ran-binding) family protein O.I. H.G. S.X.
0.50 66.9 0.96 Contig10945_at Contig10945 - - 3e+0 At5g24110 WRKY30 O.I. H.G. S.X.
0.31 38.6 0.96 Contig1512_at Contig1512 - - 0 At5g12250 TUB6 (BETA-6 TUBULIN) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.50	66.9	0.97	Contig7360_at	Contig7360	-	-	3e+0	At4g19620	unknown protein	O.I.	H.G.	S.X.
0.71	87.1	0.97	Contig2343_s_at	Contig2343	-	-	1e+0	At5g26010	catalytic/ protein serine/threonine phosphatase	O.I.	H.G.	S.X.
0.60	77.3	0.97	Contig11477_at	Contig11477	-	-	8e-5	At1g79040	PSBR (photosystem II subunit R)	O.I.	H.G.	S.X.
0.50	66.9	0.96	Contig10661_at	Contig10661	-	-	2e+0	At3g15680	zinc finger (Ran-binding) family protein	O.I.	H.G.	S.X.
0.50	66.9	0.96	Contig10945_at	Contig10945	-	-	3e+0	At5g24110	WRKY30	O.I.	H.G.	S.X.
0.31	38.6	0.96	Contig1512_at	Contig1512	-	-	0	At5g12250	TUB6 (BETA-6 TUBULIN)	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.4 99.2 GSM238429 Embryo 16DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
9.2 99.0 GSM238428 Embryo 16DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
6.3 98.1 GSM440972 Stressed awn_Rep1 GSE17669 Gene expression in the barley spike during drought stress
5.4 97.5 GSM238435 Embryo 24 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
4.6 96.8 GSM238430 Embryo 25DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
4.3 96.4 GSM238433 Embryo 0 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
4.3 96.4 GSM440973 Stressed awn_Rep2 GSE17669 Gene expression in the barley spike during drought stress
4.3 96.4 GSM238432 Embryo 0 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
4.1 96.2 GSM440974 Stressed awn_Rep3 GSE17669 Gene expression in the barley spike during drought stress
3.8 95.7 GSM213441 Barley seeds control in Hoagland solution for 12hr GSE8618 P. aeruginosa virulent factor to barley

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
10.4	99.2	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
9.2	99.0	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.3	98.1	GSM440972	Stressed awn_Rep1	GSE17669	Gene expression in the barley spike during drought stress
5.4	97.5	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.6	96.8	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.3	96.4	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.3	96.4	GSM440973	Stressed awn_Rep2	GSE17669	Gene expression in the barley spike during drought stress
4.3	96.4	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.1	96.2	GSM440974	Stressed awn_Rep3	GSE17669	Gene expression in the barley spike during drought stress
3.8	95.7	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At4g19620, orthologous to the query gene, Contig7360_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.58 73.8 At4g19620 827704 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.74 86.1 At3g61720 825345 C2 domain-containing protein F:unknown;P:tryptophan biosynthetic process;C:unknown;PMOF O.I. H.G. S.X.
0.63 78.1 At4g11745 826780 kelch repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOBA O.I. H.G. S.X.
0.57 73.8 At1g68420 843171 asparaginyl-tRNA synthetase-related F:nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding;P:translation, tRNA aminoacylation for protein translation;C:cytoplasm;BOMFAP O.I. H.G. S.X.
0.56 73.0 At1g35663 840469 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.55 70.6 At1g29480 839825 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBP O.I. H.G. S.X.
0.52 67.4 At2g04300 814968 leucine-rich repeat protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA O.I. H.G. S.X.
0.52 67.4 At5g30440 3770957 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.51 66.3 At3g30730 822811 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.48 62.5 At4g26250 828731 AtGolS6 (Arabidopsis thaliana galactinol synthase 6) F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:carbohydrate biosynthetic process;C:cellular_component unknown;PMFBVO O.I. H.G. S.X.
0.47 61.2 At4g15710 827248 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.42 53.9 At1g36670 840575 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.41 52.4 At3g04390 819594 xanthine dehydrogenase family protein F:electron carrier activity, oxidoreductase activity, catalytic activity;P:biological_process unknown;C:endomembrane system;MOBFP O.I. H.G. S.X.
0.38 46.7 At5g46440 834687 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. H.G. S.X.
0.35 41.6 At4g07450 826178 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.34 39.8 At3g60790 825250 F-box protein-related F:molecular_function unknown;P:biological_process unknown;C:unknown;PM O.I. H.G. S.X.
0.34 39.8 At5g28950 833021 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMF O.I. H.G. S.X.
0.33 38.1 At5g60130 836135 transcriptional factor B3 family protein F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;BOMFPVA O.I. H.G. S.X.
0.31 33.8 At1g47350 841138 F-box family protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.29 30.3 At2g22520 816785 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPF O.I. H.G. S.X.
0.25 22.6 At1g51900 841617 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;OMBFPVA O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	O.I.	H.G.	S.X.
0.58	73.8	At4g19620	827704	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.74	86.1	At3g61720	825345	C2 domain-containing protein	F:unknown;P:tryptophan biosynthetic process;C:unknown;PMOF	O.I.	H.G.	S.X.
0.63	78.1	At4g11745	826780	kelch repeat-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOBA	O.I.	H.G.	S.X.
0.57	73.8	At1g68420	843171	asparaginyl-tRNA synthetase-related	F:nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding;P:translation, tRNA aminoacylation for protein translation;C:cytoplasm;BOMFAP	O.I.	H.G.	S.X.
0.56	73.0	At1g35663	840469	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.55	70.6	At1g29480	839825	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBP	O.I.	H.G.	S.X.
0.52	67.4	At2g04300	814968	leucine-rich repeat protein kinase, putative	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA	O.I.	H.G.	S.X.
0.52	67.4	At5g30440	3770957	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.51	66.3	At3g30730	822811	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.48	62.5	At4g26250	828731	AtGolS6 (Arabidopsis thaliana galactinol synthase 6)	F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:carbohydrate biosynthetic process;C:cellular_component unknown;PMFBVO	O.I.	H.G.	S.X.
0.47	61.2	At4g15710	827248	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.42	53.9	At1g36670	840575	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.41	52.4	At3g04390	819594	xanthine dehydrogenase family protein	F:electron carrier activity, oxidoreductase activity, catalytic activity;P:biological_process unknown;C:endomembrane system;MOBFP	O.I.	H.G.	S.X.
0.38	46.7	At5g46440	834687	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	H.G.	S.X.
0.35	41.6	At4g07450	826178	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.34	39.8	At3g60790	825250	F-box protein-related	F:molecular_function unknown;P:biological_process unknown;C:unknown;PM	O.I.	H.G.	S.X.
0.34	39.8	At5g28950	833021	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMF	O.I.	H.G.	S.X.
0.33	38.1	At5g60130	836135	transcriptional factor B3 family protein	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;BOMFPVA	O.I.	H.G.	S.X.
0.31	33.8	At1g47350	841138	F-box family protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.29	30.3	At2g22520	816785	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPF	O.I.	H.G.	S.X.
0.25	22.6	At1g51900	841617	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;OMBFPVA	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	Contig7360_at
Gene name
Homology with Arabidopsis	Similar to At4g19620: unknown protein (HF=3e+0)
Module size	6 genes
NF	0.53
%ile	73.3

Co-expression analysis

Gene ID Contig7360_at Gene name Homology with ArabidopsisSimilar to At4g19620: unknown protein (HF=3e+0) Module size 6 genes NF 0.53 %ile 73.3

Co-expressed genes

Click More genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Glycine_maxOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Contig7360_at

Gene name
Homology with Arabidopsis Similar to At4g19620: unknown protein (HF=3e+0)

Module size 6 genes

NF 0.53

%ile 73.3

Select a plant to compare co-expressed genes between species.
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays