Co-expression analysis

Gene ID	Contig7349_at
Gene name
Homology with Arabidopsis	Similar to At2g44610: RAB6A (HF=1e-66)
Module size	16 genes
NF	0.45
%ile	62.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.68	85.1	0.95	Contig7349_at	Contig7349	-	-	1e-66	At2g44610	RAB6A	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.97	Contig2940_s_at	Contig2940	-	-	5e-6	At2g47380	cytochrome c oxidase subunit Vc family protein / COX5C family protein	O.I.	H.G.	S.X.	Please select
0.56	74.3	0.96	Contig665_s_at	Contig665	-	-	2e-20	At1g07820	histone H4	O.I.	H.G.	S.X.	Please select
0.51	67.5	0.96	Contig344_at	Contig344	-	-	5e-1	At1g71520	AP2 domain-containing transcription factor, putative	O.I.	H.G.	S.X.	Please select
0.47	62.2	0.96	Contig13733_at	Contig13733	-	-	2e-3	At5g35580	ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.97	Contig4893_at	Contig4893	-	-	2e-25	At3g02780	IPP2 (ISOPENTENYL PYROPHOSPHATE:DIMETHYLALLYL PYROPHOSPHATE ISOMERASE 2)	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.96	Contig24576_at	Contig24576	-	-	1e+0	At5g28295	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.96	Contig6283_at	Contig6283	-	-	1e-1	At3g60410	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.96	Contig2828_at	Contig2828	-	-	2e-50	At5g63400	ADK1 (ADENYLATE KINASE 1)	O.I.	H.G.	S.X.	Please select
0.42	55.2	0.96	Contig15424_at	Contig15424	-	-	2e+1	At1g03950	VPS2.3 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 2.3)	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.97	HVSMEm0005B11r2_x_at	HVSMEm0005B11r2	-	-	4e+0	At2g36020	HVA22J (HVA22-LIKE PROTEIN J)	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.97	Contig17229_at	Contig17229	-	-	1e+1	At2g28570	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.96	Contig3420_at	Contig3420	-	-	5e-66	At5g67380	CKA1 (CASEIN KINASE ALPHA 1)	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.97	Contig19935_at	Contig19935	-	-	2e-6	At3g58000	VQ motif-containing protein	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.97	Contig8718_at	Contig8718	-	-	7e+0	Atmg00150	-	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.96	Contig6631_at	Contig6631	-	-	5e-1	At1g72960	root hair defective 3 GTP-binding (RHD3) family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.4	96.6	GSM213443	Barley seeds with P. aeruginosa PA5021 mutant for 12hr	GSE8618	P. aeruginosa virulent factor to barley
4.1	96.2	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.7	95.5	GSM213436	Barley seeds with P. aeruginosa PAO1 for 12hr	GSE8618	P. aeruginosa virulent factor to barley
3.5	95.1	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds
3.5	95.1	GSM71142	OWB-R stress replicate 1	GSE3170	Barley single feature polymorphisms and drought stress gene expression
3.3	94.6	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
3.0	93.8	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
3.0	93.8	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
3.0	93.8	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment
2.8	93.1	GSM71151	Barke stress and unstress replicate 1	GSE3170	Barley single feature polymorphisms and drought stress gene expression

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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