Co-expression analysis

Gene ID Contig7349_at
Gene name
Homology with ArabidopsisSimilar to At2g44610: RAB6A (HF=1e-66)
Module size 16 genes
NF 0.45
%ile 62.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6885.10.95Contig7349_atContig7349--1e-66At2g44610RAB6AO.I.H.G.S.X.
0.6077.30.97Contig2940_s_atContig2940--5e-6At2g47380cytochrome c oxidase subunit Vc family protein / COX5C family proteinO.I.H.G.S.X.
0.5674.30.96Contig665_s_atContig665--2e-20At1g07820histone H4O.I.H.G.S.X.
0.5167.50.96Contig344_atContig344--5e-1At1g71520AP2 domain-containing transcription factor, putativeO.I.H.G.S.X.
0.4762.20.96Contig13733_atContig13733--2e-3At5g35580ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinaseO.I.H.G.S.X.
0.4458.90.97Contig4893_atContig4893--2e-25At3g02780IPP2 (ISOPENTENYL PYROPHOSPHATE:DIMETHYLALLYL PYROPHOSPHATE ISOMERASE 2)O.I.H.G.S.X.
0.4458.90.96Contig24576_atContig24576--1e+0At5g28295unknown proteinO.I.H.G.S.X.
0.4356.40.96Contig6283_atContig6283--1e-1At3g60410unknown proteinO.I.H.G.S.X.
0.4356.40.96Contig2828_atContig2828--2e-50At5g63400ADK1 (ADENYLATE KINASE 1)O.I.H.G.S.X.
0.4255.20.96Contig15424_atContig15424--2e+1At1g03950VPS2.3 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 2.3)O.I.H.G.S.X.
0.3849.50.97HVSMEm0005B11r2_x_atHVSMEm0005B11r2--4e+0At2g36020HVA22J (HVA22-LIKE PROTEIN J)O.I.H.G.S.X.
0.3545.10.97Contig17229_atContig17229--1e+1At2g28570unknown proteinO.I.H.G.S.X.
0.3342.60.96Contig3420_atContig3420--5e-66At5g67380CKA1 (CASEIN KINASE ALPHA 1)O.I.H.G.S.X.
0.3240.30.97Contig19935_atContig19935--2e-6At3g58000VQ motif-containing proteinO.I.H.G.S.X.
0.3138.60.97Contig8718_atContig8718--7e+0Atmg00150-O.I.H.G.S.X.
0.2732.10.96Contig6631_atContig6631--5e-1At1g72960root hair defective 3 GTP-binding (RHD3) family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.496.6GSM213443Barley seeds with P. aeruginosa PA5021 mutant for 12hrGSE8618P. aeruginosa virulent factor to barleyLink to GEO
4.196.2GSM238434Embryo 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.795.5GSM213436Barley seeds with P. aeruginosa PAO1 for 12hrGSE8618P. aeruginosa virulent factor to barleyLink to GEO
3.595.1GSM282040Malting_kilned_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
3.595.1GSM71142OWB-R stress replicate 1GSE3170 Barley single feature polymorphisms and drought stress gene expressionLink to GEO
3.394.6GSM282038Malting_kilned_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO
3.093.8GSM213441Barley seeds control in Hoagland solution for 12hrGSE8618P. aeruginosa virulent factor to barleyLink to GEO
3.093.8GSM282033Malting_day4_Harrington_rep4GSE11200Expression data from malting barley seedsLink to GEO
3.093.8GSM261022ABA-Control-rep2GSE10328ABA experimentLink to GEO
2.893.1GSM71151Barke stress and unstress replicate 1GSE3170 Barley single feature polymorphisms and drought stress gene expressionLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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