Co-expression analysis

Gene ID Contig7346_at
Gene name
Homology with ArabidopsisSimilar to At4g36560: unknown protein (HF=5e-1)
Module size 9 genes
NF 0.39
%ile 53.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6178.70.95Contig7346_atContig7346--5e-1At4g36560unknown proteinO.I.H.G.S.X.
0.5066.90.95Contig15126_atContig15126--5e-2At1g04590-O.I.H.G.S.X.
0.4153.90.95Contig15382_atContig15382--7e+0Atmg00550-O.I.H.G.S.X.
0.4053.10.95Contig1035_atContig1035--6e-58At4g02890UBQ14O.I.H.G.S.X.
0.4053.10.96Contig19923_atContig19923--3e-1At4g26950unknown proteinO.I.H.G.S.X.
0.3138.60.96Contig11674_atContig11674--3e-1At5g49420MADS-box protein (AGL84)O.I.H.G.S.X.
0.3037.00.95Contig23308_atContig23308--1e+0At3g13820F-box family proteinO.I.H.G.S.X.
0.3037.00.95Contig12778_atContig12778--2e-3At1g767305-formyltetrahydrofolate cyclo-ligase family proteinO.I.H.G.S.X.
0.2427.20.96Contig19027_atContig19027--1e+0At5g05290ATEXPA2 (ARABIDOPSIS THALIANA EXPANSIN A2)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.098.7GSM215732gibberellin plus Yariv-reagent treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
5.797.7GSM215729gibberellin plus Yariv-reagent treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
5.597.6GSM382234Root_Hg3GSE15295Mercury toxicity in barley rootsLink to GEO
4.796.9GSM213441Barley seeds control in Hoagland solution for 12hrGSE8618P. aeruginosa virulent factor to barleyLink to GEO
4.296.3GSM431546pathogen isolates: Mock - rep1GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
4.196.2GSM431549pathogen isolates: Polymyxa graminis - rep1GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
3.995.8GSM215728gibberellin treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
3.194.1GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.093.8GSM215730Control (DMSO) treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
2.893.1GSM282031Malting_day1_Harrington_rep1GSE11200Expression data from malting barley seedsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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