Co-expression analysis

Gene ID Contig7332_at
Gene name
Homology with ArabidopsisSimilar to At4g34660: SH3 domain-containing protein 2 (SH3P2) (HF=1e-15)
Module size 11 genes
NF 0.25
%ile 31.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7689.80.89Contig7332_atContig7332--1e-15At4g34660SH3 domain-containing protein 2 (SH3P2)O.I.H.G.S.X.
0.6480.90.92HU10E12u_s_atHU10E12u--8e-1At4g08395unknown proteinO.I.H.G.S.X.
0.5674.30.91Contig10982_atContig10982--2e-32At2g38620CDKB1O.I.H.G.S.X.
0.3138.60.94HU11D20u_s_atHU11D20u--9e-1At2g45060-O.I.H.G.S.X.
0.3138.60.96Contig8151_atContig8151--1e-20At4g22756SMO1-2 (STEROL C4-METHYL OXIDASE 1-2)O.I.H.G.S.X.
0.2427.20.94Contig11338_atContig11338--2e-4At5g58490cinnamoyl-CoA reductase familyO.I.H.G.S.X.
0.2427.20.94Contig3315_s_atContig3315--1e+0At3g14190unknown proteinO.I.H.G.S.X.
0.2326.10.94Contig5489_atContig5489--7e-64At2g13560malate oxidoreductase, putativeO.I.H.G.S.X.
0.2122.60.94HY03N17u_s_atHY03N17u--2e-1At3g19560F-box family proteinO.I.H.G.S.X.
0.1919.60.94Contig7624_atContig7624--9e-16At2g27680aldo/keto reductase family proteinO.I.H.G.S.X.
0.075.80.92Contig10924_atContig10924--5e-1At4g28030GCN5-related N-acetyltransferase (GNAT) family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.899.2GSM238415Endosperm 8DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
8.598.8GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
7.398.5GSM238414Endosperm 8DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.998.3GSM238411Pericarp 8DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.597.6GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.196.2GSM440978Stressed seed_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO
4.096.0GSM238416Endosperm 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.995.8GSM419983Seed_Rep3GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
3.995.8GSM440977Control seed_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
3.795.5GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage