Co-expression analysis

Gene ID	Contig7320_at
Gene name
Homology with Arabidopsis	Similar to At1g26690: emp24/gp25L/p24 family protein (HF=2e-1)
Module size	6 genes
NF	0.51
%ile	71.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	90.8	0.96	Contig7320_at	Contig7320	-	-	2e-1	At1g26690	emp24/gp25L/p24 family protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.96	Contig9110_at	Contig9110	-	-	2e-1	At4g13720	inosine triphosphate pyrophosphatase, putative / HAM1 family protein	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.96	Contig13861_at	Contig13861	-	-	5e-1	At3g49570	LSU3 (RESPONSE TO LOW SULFUR 3)	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.96	Contig5096_at	Contig5096	-	-	2e-12	At4g16660	heat shock protein 70, putative / HSP70, putative	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.96	Contig4933_at	Contig4933	-	-	7e-1	At4g33145	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.97	Contig3403_s_at	Contig3403	-	-	2e-2	At5g03850	40S ribosomal protein S28 (RPS28B)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
25.5	99.8	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
11.1	99.2	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.0	97.9	GSM398257	Martin_3d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
5.7	97.7	GSM398255	Martin_3d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
5.5	97.6	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
4.9	97.1	GSM398258	Martin_5d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.8	97.0	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.7	96.9	GSM215728	gibberellin treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
4.6	96.8	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
4.5	96.7	GSM398256	Martin_3d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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