Co-expression analysis

Gene ID Contig7298_at
Gene name
Homology with ArabidopsisSimilar to At4g27700: rhodanese-like domain-containing protein (HF=6e-13)
Module size 6 genes
NF 0.48
%ile 67.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6077.30.94Contig7298_atContig7298--6e-13At4g27700rhodanese-like domain-containing proteinO.I.H.G.S.X.
0.5572.00.94Contig4371_atContig4371--2e-9At1g63290ribulose-phosphate 3-epimerase, cytosolic, putative / pentose-5-phosphate 3-epimerase, putativeO.I.H.G.S.X.
0.5066.90.93HVSMEm0003E10r2_x_atHVSMEm0003E10r2--1e+0At1g61090unknown proteinO.I.H.G.S.X.
0.5066.90.93EBem08_SQ003_L01_atEBem08_SQ003_L01--1e+0At3g53450unknown proteinO.I.H.G.S.X.
0.5066.90.94Contig6211_atContig6211--8e-9At1g04630MEE4 (maternal effect embryo arrest 4)O.I.H.G.S.X.
0.2122.60.94HW08B16u_s_atHW08B16u--8e+0At5g19760dicarboxylate/tricarboxylate carrier (DTC)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.798.6GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
6.598.2GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
5.697.7GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
4.196.2GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.995.8GSM238408Pericarp 4DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.294.3GSM311253hsp5_with_aphids_1GSE12584Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines Link to GEO
2.893.1GSM689008 h salt stressed replicate 3GSE3097Barley1 salinity stress studyLink to GEO
2.792.7GSM16082619% SWC rep3GSE6990Barley drought stressLink to GEO
2.792.7GSM282041Control_dryseed_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
2.591.9GSM16081938% SWC rep1GSE6990Barley drought stressLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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