Co-expression analysis

Gene ID	Contig7283_at
Gene name
Homology with Arabidopsis	Similar to At2g26760: CYCB1 (HF=5e-8)
Module size	6 genes
NF	0.85
%ile	98.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	94.0	0.92	Contig7283_at	Contig7283	-	-	5e-8	At2g26760	CYCB1	O.I.	H.G.	S.X.	Please select
0.83	94.0	0.91	Contig13153_at	Contig13153	-	-	4e+0	At1g63460	glutathione peroxidase, putative	O.I.	H.G.	S.X.	Please select
0.83	94.0	0.91	L32165_s_at	L32165	-	-	0	At5g42020	BIP2	O.I.	H.G.	S.X.	Please select
0.77	90.8	0.92	Contig13099_at	Contig13099	-	-	1e+0	At5g52130	unknown protein	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.93	Contig16153_at	Contig16153	-	-	1e+0	At1g27760	interferon-related developmental regulator family protein / IFRD protein family	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.92	Contig50_x_at	Contig50	-	-	3e+0	At5g44610	MAP18 (Microtubule-associated Protein 18)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.4	96.6	GSM311259	kara_with_aphids_1	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
4.2	96.3	GSM440979	Stressed seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
3.3	94.6	GSM261036	Dicktoo-subzero-rep1	GSE10329	Low temperature stress in cv. Dicktoo
3.0	93.8	GSM161221	cold treatment rep3	GSE6993	Barley low temperature stress
2.9	93.4	GSM282039	Malting_day4_Morex_rep2	GSE11200	Expression data from malting barley seeds
2.7	92.7	GSM311253	hsp5_with_aphids_1	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
2.7	92.7	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
2.6	92.3	GSM282020	Malting_day4_Legacy_rep 3	GSE11200	Expression data from malting barley seeds
2.6	92.3	GSM372989	genotype: 11542 - pathogen isolates: 5874 - time: 32 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.6	92.3	GSM282032	Malting_day1_Morex_rep1	GSE11200	Expression data from malting barley seeds

Inter-species module comparison

A co-expression module including the wheat gene, Ta.14556.1.S1_x_at, orthologous to the query gene, Contig7283_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	88.0	Ta.14556.1.S1_x_at	At2g26760	-	-	4e+0	At3g11520	CYCB1	O.I.	H.G.	S.X.	Please select
0.86	94.1	Ta.14556.2.A1_at	At2g26760	-	-	6e+0	At5g06150	CYC1BAT	O.I.	H.G.	S.X.	Please select
0.77	90.8	Ta.3357.1.A1_at	At2g26760	-	-	2e+0	At4g33130	-	O.I.	H.G.	S.X.	Please select
0.77	90.8	Ta.14556.2.A1_x_at	At2g26760	-	-	6e+0	At5g06150	CYC1BAT	O.I.	H.G.	S.X.	Please select
0.71	88.0	TaAffx.91612.1.A1_at	At2g26760	-	-	4e+0	At3g07110	60S ribosomal protein L13A (RPL13aA)	O.I.	H.G.	S.X.	Please select
0.67	86.3	Ta.2157.1.A1_s_at	At2g26760	-	-	1e-1	At4g27180	ATK2 (ARABIDOPSIS THALIANA KINESIN 2)	O.I.	H.G.	S.X.	Please select
0.63	83.1	Ta.2157.2.A1_a_at	At2g26760	-	-	3e-1	At4g05190	ATK5 (ARABIDOPSIS THALIANA KINESIN 5)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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