CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig7283_at

Gene name
Homology with Arabidopsis Similar to At2g26760: CYCB1 (HF=5e-8)

Module size 6 genes

NF 0.85

%ile 98.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.83 94.0 0.92 Contig7283_at Contig7283 - - 5e-8 At2g26760 CYCB1 O.I. H.G. S.X.
0.83 94.0 0.91 Contig13153_at Contig13153 - - 4e+0 At1g63460 glutathione peroxidase, putative O.I. H.G. S.X.
0.83 94.0 0.91 L32165_s_at L32165 - - 0 At5g42020 BIP2 O.I. H.G. S.X.
0.77 90.8 0.92 Contig13099_at Contig13099 - - 1e+0 At5g52130 unknown protein O.I. H.G. S.X.
0.73 88.7 0.93 Contig16153_at Contig16153 - - 1e+0 At1g27760 interferon-related developmental regulator family protein / IFRD protein family O.I. H.G. S.X.
0.67 84.7 0.92 Contig50_x_at Contig50 - - 3e+0 At5g44610 MAP18 (Microtubule-associated Protein 18) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.4 96.6 GSM311259 kara_with_aphids_1 GSE12584 Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
4.2 96.3 GSM440979 Stressed seed_Rep2 GSE17669 Gene expression in the barley spike during drought stress
3.3 94.6 GSM261036 Dicktoo-subzero-rep1 GSE10329 Low temperature stress in cv. Dicktoo
3.0 93.8 GSM161221 cold treatment rep3 GSE6993 Barley low temperature stress
2.9 93.4 GSM282039 Malting_day4_Morex_rep2 GSE11200 Expression data from malting barley seeds
2.7 92.7 GSM311253 hsp5_with_aphids_1 GSE12584 Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
2.7 92.7 GSM282037 Malting_day1_Morex_rep2 GSE11200 Expression data from malting barley seeds
2.6 92.3 GSM282020 Malting_day4_Legacy_rep 3 GSE11200 Expression data from malting barley seeds
2.6 92.3 GSM372989 genotype: 11542 - pathogen isolates: 5874 - time: 32 - rep1 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.6 92.3 GSM282032 Malting_day1_Morex_rep1 GSE11200 Expression data from malting barley seeds

Inter-species module comparison

A co-expression module including the rice gene, Os01g0805600, orthologous to the query gene, Contig7283_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.69 87.9 Os01g0805600 At2g26760 - Cyclin IaZm (Fragment) 1e-6 At2g26760 CYCB1 O.I. H.G. S.X.
0.92 99.1 Os03g0587200 At2g26760 - Kinesin, motor region domain containing protein 8e-6 At3g20150 kinesin motor family protein O.I. H.G. S.X.
0.88 96.8 Os01g0931200 At2g26760 - ARM repeat fold domain containing protein 2e-1 At5g55850 NOI O.I. H.G. S.X.
0.86 96.4 Os12g0120000 At2g26760 - Plant protein of unknown function DUF936 familyprotein 1e+0 At2g44560 AtGH9B11 (Arabidopsis thaliana glycosyl hydrolase 9B11) O.I. H.G. S.X.
0.80 94.6 Os02g0810200 At2g26760 - Hypothetical protein 3e-2 At1g16610 SR45 O.I. H.G. S.X.
0.77 93.1 Os04g0486500 At2g26760 - Mitotic spindle checkpoint protein MAD2 1e-7 At3g25980 mitotic spindle checkpoint protein, putative (MAD2) O.I. H.G. S.X.
0.76 92.2 Os09g0560000 At2g26760 - Arabidopsis thaliana protein of unknown functionDUF813 family protein 3e-2 At2g07170 binding O.I. H.G. S.X.
0.67 87.2 Os04g0563700 At2g26760 - Cyclin 4e-6 At1g76310 CYCB2 O.I. H.G. S.X.
0.67 87.2 Os09g0547200 At2g26760 - Eukaryotic protein of unknown function DUF292domain containing protein 1e-9 At4g35730 unknown protein O.I. H.G. S.X.
0.67 87.2 Os03g0672400 At2g26760 - Conserved hypothetical protein 6e+0 At5g05965 unknown protein O.I. H.G. S.X.
0.65 83.8 Os01g0191800 At2g26760 - Serine/threonine-protein kinase 12 (EC 2.7.1.37)(Aurora-B) (Fragment) 1e-17 At2g25880 AtAUR2 (AtAurora2) O.I. H.G. S.X.
0.63 82.7 Os03g0288900 At2g26760 - Hypothetical protein 3e-1 At1g05300 ZIP5 O.I. H.G. S.X.
0.59 78.0 Os05g0476200 At2g26760 - Replication origin activator 2 6e-86 At5g46280 DNA replication licensing factor, putative O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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