CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig7283_at

Gene name
Homology with Arabidopsis Similar to At2g26760: CYCB1 (HF=5e-8)

Module size 6 genes

NF 0.85

%ile 98.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.83 94.0 0.92 Contig7283_at Contig7283 - - 5e-8 At2g26760 CYCB1 O.I. H.G. S.X.
0.83 94.0 0.91 Contig13153_at Contig13153 - - 4e+0 At1g63460 glutathione peroxidase, putative O.I. H.G. S.X.
0.83 94.0 0.91 L32165_s_at L32165 - - 0 At5g42020 BIP2 O.I. H.G. S.X.
0.77 90.8 0.92 Contig13099_at Contig13099 - - 1e+0 At5g52130 unknown protein O.I. H.G. S.X.
0.73 88.7 0.93 Contig16153_at Contig16153 - - 1e+0 At1g27760 interferon-related developmental regulator family protein / IFRD protein family O.I. H.G. S.X.
0.67 84.7 0.92 Contig50_x_at Contig50 - - 3e+0 At5g44610 MAP18 (Microtubule-associated Protein 18) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.4 96.6 GSM311259 kara_with_aphids_1 GSE12584 Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
4.2 96.3 GSM440979 Stressed seed_Rep2 GSE17669 Gene expression in the barley spike during drought stress
3.3 94.6 GSM261036 Dicktoo-subzero-rep1 GSE10329 Low temperature stress in cv. Dicktoo
3.0 93.8 GSM161221 cold treatment rep3 GSE6993 Barley low temperature stress
2.9 93.4 GSM282039 Malting_day4_Morex_rep2 GSE11200 Expression data from malting barley seeds
2.7 92.7 GSM311253 hsp5_with_aphids_1 GSE12584 Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
2.7 92.7 GSM282037 Malting_day1_Morex_rep2 GSE11200 Expression data from malting barley seeds
2.6 92.3 GSM282020 Malting_day4_Legacy_rep 3 GSE11200 Expression data from malting barley seeds
2.6 92.3 GSM372989 genotype: 11542 - pathogen isolates: 5874 - time: 32 - rep1 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.6 92.3 GSM282032 Malting_day1_Morex_rep1 GSE11200 Expression data from malting barley seeds

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At2g26760, orthologous to the query gene, Contig7283_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.63 78.1 At2g26760 817217 CYCB1 F:cyclin-dependent protein kinase regulator activity;P:regulation of cell cycle;C:nucleus;MPOFV O.I. H.G. S.X.
0.84 91.9 At4g15830 827264 binding F:binding;P:biological_process unknown;C:cellular_component unknown;MPOF O.I. H.G. S.X.
0.82 90.9 At3g02640 821289 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PO O.I. H.G. S.X.
0.75 86.9 At1g02730 839467 ATCSLD5 Encodes a gene similar to cellulose synthase. Knock-out mutant has reduced growth, reduced xylan level and reduced xylan synthase activity in stems. O.I. H.G. S.X.
0.75 86.9 At3g53190 824485 pectate lyase family protein F:lyase activity, pectate lyase activity;P:biological_process unknown;C:anchored to membrane;BPFO O.I. H.G. S.X.
0.74 86.1 At4g33260 829462 CDC20.2 putative cdc20 protein (CDC20.2) O.I. H.G. S.X.
0.73 85.5 At1g18370 838418 HIK (HINKEL) Mutant has cytokinesis defects; seedling lethal O.I. H.G. S.X.
0.73 85.5 At3g25980 822195 mitotic spindle checkpoint protein, putative (MAD2) F:DNA binding;P:mitosis, mitotic cell cycle spindle assembly checkpoint;C:endomembrane system;MFOP O.I. H.G. S.X.
0.71 84.2 At5g36710 833636 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. H.G. S.X.
0.70 83.5 At1g76310 843964 CYCB2 core cell cycle genes O.I. H.G. S.X.
0.70 83.5 At2g25060 817044 plastocyanin-like domain-containing protein F:electron carrier activity, copper ion binding;P:unknown;C:anchored to plasma membrane, plasma membrane, anchored to membrane;P O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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