Co-expression analysis

Gene ID Contig7283_at
Gene name
Homology with ArabidopsisSimilar to At2g26760: CYCB1 (HF=5e-8)
Module size 6 genes
NF 0.85
%ile 98.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8394.00.92Contig7283_atContig7283--5e-8At2g26760CYCB1O.I.H.G.S.X.
0.8394.00.91Contig13153_atContig13153--4e+0At1g63460glutathione peroxidase, putativeO.I.H.G.S.X.
0.8394.00.91L32165_s_atL32165--0At5g42020BIP2O.I.H.G.S.X.
0.7790.80.92Contig13099_atContig13099--1e+0At5g52130unknown proteinO.I.H.G.S.X.
0.7388.70.93Contig16153_atContig16153--1e+0At1g27760interferon-related developmental regulator family protein / IFRD protein familyO.I.H.G.S.X.
0.6784.70.92Contig50_x_atContig50--3e+0At5g44610MAP18 (Microtubule-associated Protein 18)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.496.6GSM311259kara_with_aphids_1GSE12584Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines Link to GEO
4.296.3GSM440979Stressed seed_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO
3.394.6GSM261036Dicktoo-subzero-rep1GSE10329Low temperature stress in cv. DicktooLink to GEO
3.093.8GSM161221cold treatment rep3GSE6993Barley low temperature stressLink to GEO
2.993.4GSM282039Malting_day4_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
2.792.7GSM311253hsp5_with_aphids_1GSE12584Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines Link to GEO
2.792.7GSM282037Malting_day1_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
2.692.3GSM282020Malting_day4_Legacy_rep 3GSE11200Expression data from malting barley seedsLink to GEO
2.692.3GSM372989genotype: 11542 - pathogen isolates: 5874 - time: 32 - rep1GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
2.692.3GSM282032Malting_day1_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At2g26760, orthologous to the query gene, Contig7283_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
0.6378.1At2g26760817217CYCB1F:cyclin-dependent protein kinase regulator activity;P:regulation of cell cycle;C:nucleus;MPOFVO.I.H.G.S.X.
0.8491.9At4g15830827264bindingF:binding;P:biological_process unknown;C:cellular_component unknown;MPOFO.I.H.G.S.X.
0.8290.9At3g02640821289unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;POO.I.H.G.S.X.
0.7586.9At1g02730839467ATCSLD5Encodes a gene similar to cellulose synthase. Knock-out mutant has reduced growth, reduced xylan level and reduced xylan synthase activity in stems.O.I.H.G.S.X.
0.7586.9At3g53190824485pectate lyase family proteinF:lyase activity, pectate lyase activity;P:biological_process unknown;C:anchored to membrane;BPFOO.I.H.G.S.X.
0.7486.1At4g33260829462CDC20.2putative cdc20 protein (CDC20.2)O.I.H.G.S.X.
0.7385.5At1g18370838418HIK (HINKEL)Mutant has cytokinesis defects; seedling lethalO.I.H.G.S.X.
0.7385.5At3g25980822195mitotic spindle checkpoint protein, putative (MAD2)F:DNA binding;P:mitosis, mitotic cell cycle spindle assembly checkpoint;C:endomembrane system;MFOPO.I.H.G.S.X.
0.7184.2At5g36710833636unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.7083.5At1g76310843964CYCB2core cell cycle genesO.I.H.G.S.X.
0.7083.5At2g25060817044plastocyanin-like domain-containing proteinF:electron carrier activity, copper ion binding;P:unknown;C:anchored to plasma membrane, plasma membrane, anchored to membrane;PO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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