Co-expression analysis

Gene ID Contig7280_at
Gene name
Homology with ArabidopsisSimilar to At3g62600: ATERDJ3B (HF=3e-12)
Module size 6 genes
NF 0.56
%ile 77.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.97Contig7280_atContig7280--3e-12At3g62600ATERDJ3BO.I.H.G.S.X.
0.6784.70.96Contig13273_atContig13273--7e-19At1g55270kelch repeat-containing F-box family proteinO.I.H.G.S.X.
0.6380.30.96HVSMEi0010A19r2_s_atHVSMEi0010A19r2--8e+0At5g65890ACR1 (ACT Domain Repeat 1)O.I.H.G.S.X.
0.5774.90.97Contig8084_atContig8084--1e-7At1g32990PRPL11 (PLASTID RIBOSOMAL PROTEIN L11)O.I.H.G.S.X.
0.5369.70.96Contig10309_atContig10309--6e+0At5g22520unknown proteinO.I.H.G.S.X.
0.2935.50.96Contig10093_s_atContig10093--2e-3At1g74970RPS9 (RIBOSOMAL PROTEIN S9)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.196.2GSM160815drought control rep3GSE6990Barley drought stressLink to GEO
4.096.0GSM261036Dicktoo-subzero-rep1GSE10329Low temperature stress in cv. DicktooLink to GEO
3.795.5GSM261032Dicktoo control-rep3GSE10329Low temperature stress in cv. DicktooLink to GEO
3.795.5GSM161200cold treatment rep1GSE6993Barley low temperature stressLink to GEO
3.494.8GSM161221cold treatment rep3GSE6993Barley low temperature stressLink to GEO
3.294.3GSM160744drought control rep2GSE6990Barley drought stressLink to GEO
3.194.1GSM130806JA and salinity stress, biological rep2GSE5605Expression data from barley under salinity stress and JA treatmentLink to GEO
3.194.1GSM261030Dicktoo-control-rep1GSE10329Low temperature stress in cv. DicktooLink to GEO
3.194.1GSM261033Dicktoo-chilling-rep1GSE10329Low temperature stress in cv. DicktooLink to GEO
3.093.8GSM238435Embryo 24 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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