Co-expression analysis

Gene ID	Contig7277_at
Gene name
Homology with Arabidopsis	Similar to At5g11110: ATSPS2F (SUCROSE PHOSPHATE SYNTHASE 2F) (HF=3e-8)
Module size	6 genes
NF	0.40
%ile	55.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	87.1	0.96	Contig7277_at	Contig7277	-	-	3e-8	At5g11110	ATSPS2F (SUCROSE PHOSPHATE SYNTHASE 2F)	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.96	Contig12737_at	Contig12737	-	-	2e-3	At5g48950	thioesterase family protein	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.96	Contig4424_at	Contig4424	-	-	1e-5	At5g40150	peroxidase, putative	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.96	Contig16579_at	Contig16579	-	-	2e+0	At4g14695	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.96	HX01C23w_s_at	HX01C23w	-	-	5e+0	At5g17165	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.96	EBem05_SQ003_O06_at	EBem05_SQ003_O06	-	-	1e+0	At2g17380	AP19	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
25.1	99.8	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds
18.4	99.7	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
6.6	98.2	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.6	98.2	GSM440968	Stressed palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
5.8	97.8	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.2	97.4	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.8	97.0	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.6	96.8	GSM238418	Endosperm 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.5	96.7	GSM238422	Endosperm 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.4	96.6	GSM213443	Barley seeds with P. aeruginosa PA5021 mutant for 12hr	GSE8618	P. aeruginosa virulent factor to barley

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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