Co-expression analysis

Gene ID	Contig7265_s_at
Gene name
Homology with Arabidopsis	Similar to At5g47080: CKB1 (HF=1e-57)
Module size	6 genes
NF	0.39
%ile	52.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	88.7	0.94	Contig7265_s_at	Contig7265	-	-	1e-57	At5g47080	CKB1	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.96	Contig22799_at	Contig22799	-	-	1e+0	At4g32551	LUG (LEUNIG)	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.96	Contig21692_at	Contig21692	-	-	3e+0	At2g35970	harpin-induced family protein / HIN1 family protein / harpin-responsive family protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.95	Contig11890_at	Contig11890	-	-	4e-5	At4g21580	oxidoreductase, zinc-binding dehydrogenase family protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.96	Contig8795_at	Contig8795	-	-	6e-1	At2g26500	cytochrome b6f complex subunit (petM), putative	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.94	Contig10811_at	Contig10811	-	-	1e-1	At5g48680	sterile alpha motif (SAM) domain-containing protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.6	96.8	GSM372962	genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.2	96.3	GSM261033	Dicktoo-chilling-rep1	GSE10329	Low temperature stress in cv. Dicktoo
3.6	95.3	GSM282030	Malting_day4_Harrington_rep2	GSE11200	Expression data from malting barley seeds
2.8	93.1	GSM261034	Dicktoo-chilling-rep2	GSE10329	Low temperature stress in cv. Dicktoo
2.8	93.1	GSM372963	genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.6	92.3	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
2.6	92.3	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
2.5	91.9	GSM282035	Malting_day4_Morex_rep1	GSE11200	Expression data from malting barley seeds
2.4	91.4	GSM282039	Malting_day4_Morex_rep2	GSE11200	Expression data from malting barley seeds
2.4	91.4	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage