Co-expression analysis

Gene ID	Contig7213_at
Gene name
Homology with Arabidopsis	Similar to At1g29900: CARB (CARBAMOYL PHOSPHATE SYNTHETASE B) (HF=8e-27)
Module size	7 genes
NF	0.40
%ile	55.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	66.9	0.79	Contig7213_at	Contig7213	-	-	8e-27	At1g29900	CARB (CARBAMOYL PHOSPHATE SYNTHETASE B)	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.82	Contig26512_at	Contig26512	-	-	2e-13	At1g08090	ATNRT2:1 (NITRATE TRANSPORTER 2:1)	O.I.	H.G.	S.X.	Please select
0.48	63.2	0.84	Contig15721_at	Contig15721	-	-	1e+0	At5g59360	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.85	Contig18_s_at	Contig18	-	-	8e-2	At5g25940	early nodulin-related	O.I.	H.G.	S.X.	Please select
0.39	50.5	0.79	HT11N18r_s_at	HT11N18r	-	-	1e+0	At1g16025	unknown protein	O.I.	H.G.	S.X.	Please select
0.37	47.9	0.80	Contig1321_at	Contig1321	-	-	3e-88	At5g37780	CAM1 (CALMODULIN 1)	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.78	Contig8961_at	Contig8961	-	-	1e-1	At5g66400	RAB18 (RESPONSIVE TO ABA 18)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.9	98.7	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
4.7	96.9	GSM215731	gibberellin treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
4.3	96.4	GSM146368	Maythorpe Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.2	96.3	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
3.9	95.8	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.6	95.3	GSM146362	Golden Promise Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.3	94.6	GSM146359	Golden Promise Root Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.1	94.1	GSM146364	Maythorpe Root Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.0	93.8	GSM261041	Dicktoo-deacclimation-rep3	GSE10329	Low temperature stress in cv. Dicktoo
3.0	93.8	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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