Co-expression analysis

Gene ID Contig7210_at
Gene name
Homology with ArabidopsisSimilar to At5g19190: unknown protein (HF=1e+0)
Module size 6 genes
NF 0.13
%ile 16.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6178.70.82Contig7210_atContig7210--1e+0At5g19190unknown proteinO.I.H.G.S.X.
0.4053.10.87Contig15171_s_atContig15171--1e+0At2g05380GRP3S (GLYCINE-RICH PROTEIN 3 SHORT ISOFORM)O.I.H.G.S.X.
0.3138.60.82S0000700012G10F2_atS0000700012G10F2--5e-1At5g61030GR-RBP3 (glycine-rich RNA-binding protein 3)O.I.H.G.S.X.
0.2326.10.85Contig5262_atContig5262--7e-8At1g31970STRS1 (STRESS RESPONSE SUPPRESSOR 1)O.I.H.G.S.X.
0.108.40.83Contig7377_s_atContig7377--1e-1At2g25810TIP4O.I.H.G.S.X.
0.032.60.82Contig4285_atContig4285--4e-1At2g39960microsomal signal peptidase 25 kDa subunit, putative (SPC25)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
46.999.9GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
17.099.6GSM238413Endosperm 4DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
7.398.5GSM440979Stressed seed_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO
5.997.9GSM440980Stressed seed_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
5.897.8GSM419982Seed_Rep2GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
5.897.8GSM440976Control seed_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO
5.597.6GSM440978Stressed seed_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO
5.497.5GSM419983Seed_Rep3GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
5.497.5GSM440977Control seed_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
5.397.4GSM419981Seed_Rep1GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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