CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig7164_at

Gene name
Homology with Arabidopsis Similar to At2g40435: - (HF=2e+0)

Module size 6 genes

NF 0.71

%ile 91.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.1 0.93 Contig7164_at Contig7164 - - 2e+0 At2g40435 - O.I. H.G. S.X.
0.71 87.1 0.95 HS04L14u_at HS04L14u - - 2e+0 At2g21237 unknown protein O.I. H.G. S.X.
0.67 84.7 0.95 EBem10_SQ001_P13_s_at EBem10_SQ001_P13 - - 8e+0 At5g66550 Maf family protein O.I. H.G. S.X.
0.61 78.7 0.93 Contig17080_at Contig17080 - - 9e+0 At5g64816 unknown protein O.I. H.G. S.X.
0.55 72.0 0.95 Contig18343_at Contig18343 - - 2e+0 At2g05070 LHCB2.2 O.I. H.G. S.X.
0.40 53.1 0.95 Contig14437_at Contig14437 - - 1e+0 At4g19640 ARA7 O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	98.1	0.93	Contig7164_at	Contig7164	-	-	2e+0	At2g40435	-	O.I.	H.G.	S.X.
0.71	87.1	0.95	HS04L14u_at	HS04L14u	-	-	2e+0	At2g21237	unknown protein	O.I.	H.G.	S.X.
0.67	84.7	0.95	EBem10_SQ001_P13_s_at	EBem10_SQ001_P13	-	-	8e+0	At5g66550	Maf family protein	O.I.	H.G.	S.X.
0.61	78.7	0.93	Contig17080_at	Contig17080	-	-	9e+0	At5g64816	unknown protein	O.I.	H.G.	S.X.
0.55	72.0	0.95	Contig18343_at	Contig18343	-	-	2e+0	At2g05070	LHCB2.2	O.I.	H.G.	S.X.
0.40	53.1	0.95	Contig14437_at	Contig14437	-	-	1e+0	At4g19640	ARA7	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.86	94.8	0.93	Contig12748_at	Contig12748	-	-	6e-2	At1g80130	binding	O.I.	H.G.	S.X.
0.71	87.1	0.93	EBem10_SQ001_I24_s_at	EBem10_SQ001_I24	-	-	2e+1	At4g05494	unknown protein	O.I.	H.G.	S.X.
0.71	87.1	0.92	Contig12234_at	Contig12234	-	-	1e-16	At4g24550	clathrin adaptor complexes medium subunit family protein	O.I.	H.G.	S.X.
0.67	84.7	0.91	Contig785_x_at	Contig785	-	-	2e+0	At4g33450	MYB69 (MYB DOMAIN PROTEIN 69)	O.I.	H.G.	S.X.
0.60	77.3	0.74	EBro08_SQ008_L03_at	EBro08_SQ008_L03	-	-	1e+0	At3g02640	unknown protein	O.I.	H.G.	S.X.
0.60	77.3	0.79	Contig11534_at	Contig11534	-	-	1e-1	At5g21910	unknown protein	O.I.	H.G.	S.X.
0.60	77.3	0.90	Contig5270_x_at	Contig5270	-	-	2e+0	At4g14430	IBR10 (INDOLE-3-BUTYRIC ACID RESPONSE 10)	O.I.	H.G.	S.X.
0.59	75.8	0.80	EBem05_SQ002_D05_s_at	EBem05_SQ002_D05	-	-	8e+0	At5g48205	zinc ion binding	O.I.	H.G.	S.X.
0.57	74.9	0.87	Contig18940_at	Contig18940	-	-	6e-13	At5g09350	PI-4KBETA2 (PHOSPHATIDYLINOSITOL 4-OH KINASE BETA2)	O.I.	H.G.	S.X.
0.57	74.9	0.89	Contig16332_at	Contig16332	-	-	3e-1	At5g41560	-	O.I.	H.G.	S.X.
0.57	74.9	0.92	Contig6087_s_at	Contig6087	-	-	7e+0	At5g46900	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.
0.57	74.9	0.92	HVSMEl0010B18r2_at	HVSMEl0010B18r2	-	-	1e+0	At1g49130	zinc finger (B-box type) family protein	O.I.	H.G.	S.X.
0.55	72.0	0.73	Contig12486_at	Contig12486	-	-	1e+0	At5g51812	unknown protein	O.I.	H.G.	S.X.
0.55	72.0	0.78	Contig1453_at	Contig1453	-	-	6e-38	At3g25520	ATL5 (A. THALIANA RIBOSOMAL PROTEIN L5)	O.I.	H.G.	S.X.
0.55	72.0	0.79	Contig17614_at	Contig17614	-	-	5e+0	At4g16240	unknown protein	O.I.	H.G.	S.X.
0.55	72.0	0.95	Contig8058_at	Contig8058	-	-	5e+0	At3g15210	ERF4 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4)	O.I.	H.G.	S.X.
0.53	69.7	0.89	HVSMEl0010C23r2_at	HVSMEl0010C23r2	-	-	1e+0	At4g03520	ATHM2	O.I.	H.G.	S.X.
0.52	68.3	0.75	Contig4530_at	Contig4530	-	-	4e-2	At5g40650	SDH2-2	O.I.	H.G.	S.X.
0.50	66.9	0.76	Contig7003_at	Contig7003	-	-	5e-1	At3g13800	metallo-beta-lactamase family protein	O.I.	H.G.	S.X.
0.50	66.9	0.90	Contig21381_at	Contig21381	-	-	2e-1	At1g70000	DNA-binding family protein	O.I.	H.G.	S.X.
0.47	62.2	0.87	Contig18391_at	Contig18391	-	-	1e+1	Atmg01410	-	O.I.	H.G.	S.X.
0.46	61.0	0.83	Contig19116_at	Contig19116	-	-	3e+0	At2g05915	unknown protein	O.I.	H.G.	S.X.
0.46	61.0	0.86	Contig2856_x_at	Contig2856	-	-	4e+0	At4g21902	unknown protein	O.I.	H.G.	S.X.
0.46	61.0	0.90	Contig8184_at	Contig8184	-	-	2e+0	Atcg00900	-	O.I.	H.G.	S.X.
0.44	58.9	0.84	Contig25629_at	Contig25629	-	-	2e+1	At5g18030	auxin-responsive protein, putative	O.I.	H.G.	S.X.
0.44	58.9	0.85	Contig24055_at	Contig24055	-	-	5e+0	At5g40451	unknown protein	O.I.	H.G.	S.X.
0.42	55.2	0.91	Contig13441_at	Contig13441	-	-	2e-1	At2g36470	unknown protein	O.I.	H.G.	S.X.
0.40	53.1	0.83	Contig3259_at	Contig3259	-	-	2e+1	At5g63480	unknown protein	O.I.	H.G.	S.X.
0.40	53.1	0.86	HVSMEb0009G08f_at	HVSMEb0009G08f	-	-	8e+0	At5g10870	ATCM2 (chorismate mutase 2)	O.I.	H.G.	S.X.
0.40	53.1	0.91	Contig3692_s_at	Contig3692	-	-	1e+0	At5g26594	ARR24 (Arabidopsis response regulator 24)	O.I.	H.G.	S.X.
0.38	49.5	0.90	Contig526_x_at	Contig526	-	-	2e+0	At1g06530	myosin heavy chain-related	O.I.	H.G.	S.X.
0.37	47.9	0.91	Contig6089_at	Contig6089	-	-	2e-23	At3g15610	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.
0.36	47.1	0.86	Contig8085_at	Contig8085	-	-	2e-1	At5g64310	AGP1 (ARABINOGALACTAN PROTEIN 1)	O.I.	H.G.	S.X.
0.36	47.1	0.93	Contig1507_at	Contig1507	-	-	0	At5g12250	TUB6 (BETA-6 TUBULIN)	O.I.	H.G.	S.X.
0.35	45.1	0.90	Contig25993_at	Contig25993	-	-	6e-2	At2g36640	ATECP63 (EMBRYONIC CELL PROTEIN 63)	O.I.	H.G.	S.X.
0.34	43.6	0.82	Contig3690_s_at	Contig3690	plasma membrane associated protein	-	4e+0	At2g30000	-	O.I.	H.G.	S.X.
0.33	42.6	0.89	Contig545_s_at	Contig545	-	-	8e-77	At2g18020	EMB2296 (embryo defective 2296)	O.I.	H.G.	S.X.
0.32	40.3	0.82	Contig13091_s_at	Contig13091	-	-	4e+0	At1g79170	unknown protein	O.I.	H.G.	S.X.
0.29	35.5	0.77	Contig3691_at	Contig3691	-	-	1e-1	At2g02990	RNS1 (RIBONUCLEASE 1)	O.I.	H.G.	S.X.
0.29	35.5	0.78	HS17L24u_x_at	HS17L24u	-	-	1e-2	At2g46200	unknown protein	O.I.	H.G.	S.X.
0.29	35.5	0.87	Contig2562_at	Contig2562	-	-	2e-29	At3g47340	ASN1 (GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1)	O.I.	H.G.	S.X.
0.28	35.5	0.83	Contig19503_at	Contig19503	-	-	7e-1	At1g61930	unknown protein	O.I.	H.G.	S.X.
0.28	35.5	0.63	HVSMEh0087I16r2_x_at	HVSMEh0087I16r2	-	-	4e+0	At3g09310	unknown protein	O.I.	H.G.	S.X.
0.27	32.1	0.75	Contig17071_at	Contig17071	-	-	2e+0	At1g74370	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.27	32.1	0.77	Contig3260_at	Contig3260	-	-	6e+0	At2g25565	-	O.I.	H.G.	S.X.
0.27	32.1	0.56	HV_CEa0010G01r2_at	HV_CEa0010G01r2	-	-	4e+0	At5g38300	unknown protein	O.I.	H.G.	S.X.
0.26	30.4	0.78	Contig9700_at	Contig9700	-	-	4e-2	At1g07440	tropinone reductase, putative / tropine dehydrogenase, putative	O.I.	H.G.	S.X.
0.25	28.9	0.83	Contig8149_at	Contig8149	-	-	6e+0	At4g14225	zinc finger (AN1-like) family protein	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
42.8 99.9 GSM282033 Malting_day4_Harrington_rep4 GSE11200 Expression data from malting barley seeds
6.2 98.0 GSM282031 Malting_day1_Harrington_rep1 GSE11200 Expression data from malting barley seeds
4.9 97.1 GSM282030 Malting_day4_Harrington_rep2 GSE11200 Expression data from malting barley seeds
2.9 93.4 GSM238430 Embryo 25DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
2.6 92.3 GSM238420 Endosperm 0 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
2.6 92.3 GSM382236 Root_Control2 GSE15295 Mercury toxicity in barley roots
2.6 92.3 GSM146368 Maythorpe Root Salt, biological rep 3 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
2.6 92.3 GSM238425 Endosperm 48 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
2.5 91.9 GSM238433 Embryo 0 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
2.5 91.9 GSM238432 Embryo 0 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
42.8	99.9	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
6.2	98.0	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
4.9	97.1	GSM282030	Malting_day4_Harrington_rep2	GSE11200	Expression data from malting barley seeds
2.9	93.4	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.6	92.3	GSM238420	Endosperm 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.6	92.3	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots
2.6	92.3	GSM146368	Maythorpe Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
2.6	92.3	GSM238425	Endosperm 48 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.5	91.9	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.5	91.9	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage

Gene ID	Contig7164_at
Gene name
Homology with Arabidopsis	Similar to At2g40435: - (HF=2e+0)
Module size	6 genes
NF	0.71
%ile	91.9

Co-expression analysis

Gene ID Contig7164_at Gene name Homology with ArabidopsisSimilar to At2g40435: - (HF=2e+0) Module size 6 genes NF 0.71 %ile 91.9

Co-expressed genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Contig7164_at

Gene name
Homology with Arabidopsis Similar to At2g40435: - (HF=2e+0)

Module size 6 genes

NF 0.71

%ile 91.9

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays