Co-expression analysis

Gene ID	Contig7164_at
Gene name
Homology with Arabidopsis	Similar to At2g40435: - (HF=2e+0)
Module size	6 genes
NF	0.71
%ile	91.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.93	Contig7164_at	Contig7164	-	-	2e+0	At2g40435	-	O.I.	H.G.	S.X.	Please select
0.71	87.1	0.95	HS04L14u_at	HS04L14u	-	-	2e+0	At2g21237	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.95	EBem10_SQ001_P13_s_at	EBem10_SQ001_P13	-	-	8e+0	At5g66550	Maf family protein	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.93	Contig17080_at	Contig17080	-	-	9e+0	At5g64816	unknown protein	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.95	Contig18343_at	Contig18343	-	-	2e+0	At2g05070	LHCB2.2	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.95	Contig14437_at	Contig14437	-	-	1e+0	At4g19640	ARA7	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
42.8	99.9	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
6.2	98.0	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
4.9	97.1	GSM282030	Malting_day4_Harrington_rep2	GSE11200	Expression data from malting barley seeds
2.9	93.4	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.6	92.3	GSM238420	Endosperm 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.6	92.3	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots
2.6	92.3	GSM146368	Maythorpe Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
2.6	92.3	GSM238425	Endosperm 48 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.5	91.9	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.5	91.9	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

A co-expression module including the grape gene, 1607865_at, orthologous to the query gene, Contig7164_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	87.9	1607865_at	At2g40435	hypothetical protein LOC100253619	-	2e-3	At5g62810	PEX14	O.I.	H.G.	S.X.	Please select
0.67	87.9	1615944_s_at	At2g40435	hypothetical protein LOC100245122	-	2e-39	At4g27130	eukaryotic translation initiation factor SUI1, putative	O.I.	H.G.	S.X.	Please select
0.61	83.2	1613943_at	At2g40435	hypothetical protein LOC100263616	-	2e-9	At1g23440	pyrrolidone-carboxylate peptidase family protein	O.I.	H.G.	S.X.	Please select
0.40	57.7	1616781_at	At2g40435	hypothetical protein LOC100248973	-	2e+0	At5g47130	Bax inhibitor-1 family / BI-1 family	O.I.	H.G.	S.X.	Please select
0.33	45.7	1622285_at	At2g40435	hypothetical protein LOC100257920	-	1e-10	At3g04460	PEX12	O.I.	H.G.	S.X.	Please select
0.17	18.2	1620490_at	At2g40435	hypothetical protein LOC100246112	-	6e-1	At5g04170	calcium-binding EF hand family protein	O.I.	H.G.	S.X.	Please select
0.10	10.3	1615672_at	At2g40435	hypothetical protein LOC100267237	-	2e-7	At1g51200	zinc finger (AN1-like) family protein	O.I.	H.G.	S.X.	Please select
0.10	10.3	1619316_s_at	At2g40435	hypothetical protein LOC100261243	-	3e-67	At2g02760	ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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