CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig7164_at

Gene name
Homology with Arabidopsis Similar to At2g40435: - (HF=2e+0)

Module size 6 genes

NF 0.71

%ile 91.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.1 0.93 Contig7164_at Contig7164 - - 2e+0 At2g40435 - O.I. H.G. S.X.
0.71 87.1 0.95 HS04L14u_at HS04L14u - - 2e+0 At2g21237 unknown protein O.I. H.G. S.X.
0.67 84.7 0.95 EBem10_SQ001_P13_s_at EBem10_SQ001_P13 - - 8e+0 At5g66550 Maf family protein O.I. H.G. S.X.
0.61 78.7 0.93 Contig17080_at Contig17080 - - 9e+0 At5g64816 unknown protein O.I. H.G. S.X.
0.55 72.0 0.95 Contig18343_at Contig18343 - - 2e+0 At2g05070 LHCB2.2 O.I. H.G. S.X.
0.40 53.1 0.95 Contig14437_at Contig14437 - - 1e+0 At4g19640 ARA7 O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
42.8 99.9 GSM282033 Malting_day4_Harrington_rep4 GSE11200 Expression data from malting barley seeds
6.2 98.0 GSM282031 Malting_day1_Harrington_rep1 GSE11200 Expression data from malting barley seeds
4.9 97.1 GSM282030 Malting_day4_Harrington_rep2 GSE11200 Expression data from malting barley seeds
2.9 93.4 GSM238430 Embryo 25DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
2.6 92.3 GSM238420 Endosperm 0 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
2.6 92.3 GSM382236 Root_Control2 GSE15295 Mercury toxicity in barley roots
2.6 92.3 GSM146368 Maythorpe Root Salt, biological rep 3 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
2.6 92.3 GSM238425 Endosperm 48 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
2.5 91.9 GSM238433 Embryo 0 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
2.5 91.9 GSM238432 Embryo 0 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains

Inter-species module comparison

A co-expression module including the rice gene, Os05g0101200, orthologous to the query gene, Contig7164_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.60 79.7 Os05g0101200 At2g40435 - Peroxisomal membrane anchor protein (Pex14p)domain containing protein 1e+0 At5g61660 glycine-rich protein O.I. H.G. S.X.
0.77 93.1 Os10g0464400 At2g40435 - Riboflavin kinase / FAD synthetase family protein 3e-22 At4g21470 ATFMN/FHY (riboflavin kinase/FMN hydrolase) O.I. H.G. S.X.
0.73 91.1 Os12g0612100 At2g40435 - Hypothetical protein 9e-1 At5g38290 peptidyl-tRNA hydrolase family protein O.I. H.G. S.X.
0.73 91.1 Os02g0773300 At2g40435 - Pyridoxal phosphate-dependent deaminase familyprotein 3e-12 At1g48420 D-CDES (D-CYSTEINE DESULFHYDRASE) O.I. H.G. S.X.
0.60 79.7 Os09g0323100 At2g40435 - Zn-finger, RING domain containing protein 1e-3 At1g80400 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.55 73.7 Os08g0562700 At2g40435 - Aminopeptidase N 4e-44 At1g63770 peptidase M1 family protein O.I. H.G. S.X.
0.44 58.1 Os01g0104100 At2g40435 - The start codon is not identified. 1e-2 At3g54360 protein binding / zinc ion binding O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage