Co-expression analysis

Gene ID	Contig7164_at
Gene name
Homology with Arabidopsis	Similar to At2g40435: - (HF=2e+0)
Module size	6 genes
NF	0.71
%ile	91.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.93	Contig7164_at	Contig7164	-	-	2e+0	At2g40435	-	O.I.	H.G.	S.X.	Please select
0.71	87.1	0.95	HS04L14u_at	HS04L14u	-	-	2e+0	At2g21237	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.95	EBem10_SQ001_P13_s_at	EBem10_SQ001_P13	-	-	8e+0	At5g66550	Maf family protein	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.93	Contig17080_at	Contig17080	-	-	9e+0	At5g64816	unknown protein	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.95	Contig18343_at	Contig18343	-	-	2e+0	At2g05070	LHCB2.2	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.95	Contig14437_at	Contig14437	-	-	1e+0	At4g19640	ARA7	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
42.8	99.9	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
6.2	98.0	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
4.9	97.1	GSM282030	Malting_day4_Harrington_rep2	GSE11200	Expression data from malting barley seeds
2.9	93.4	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.6	92.3	GSM238420	Endosperm 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.6	92.3	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots
2.6	92.3	GSM146368	Maythorpe Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
2.6	92.3	GSM238425	Endosperm 48 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.5	91.9	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.5	91.9	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.60207.1.S1_at, orthologous to the query gene, Contig7164_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	GmaAffx.60207.1.S1_at	At2g40435	-	-	7e-6	At5g62810	PEX14	O.I.	H.G.	S.X.	Please select
0.44	63.3	Gma.5989.1.S1_at	At2g40435	-	-	3e-25	At4g35450	AKR2 (ANKYRIN REPEAT-CONTAINING PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.29	39.0	Gma.10751.3.S1_x_at	At2g40435	-	-	8e-24	At2g42680	MBF1A (MULTIPROTEIN BRIDGING FACTOR 1A)	O.I.	H.G.	S.X.	Please select
0.27	35.7	GmaAffx.89071.1.S1_s_at	At2g40435	-	-	2e-36	At1g26550	peptidyl-prolyl cis-trans isomerase PPIC-type family protein	O.I.	H.G.	S.X.	Please select
0.11	14.2	Gma.11129.2.S1_x_at	At2g40435	-	-	8e-39	At3g05840	ATSK12	O.I.	H.G.	S.X.	Please select
0.07	10.2	GmaAffx.8927.1.S1_at	At2g40435	-	-	5e-32	At4g39100	SHL1 (short life)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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