Co-expression analysis

Gene ID Contig7164_at
Gene name
Homology with ArabidopsisSimilar to At2g40435: - (HF=2e+0)
Module size 6 genes
NF 0.71
%ile 91.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.93Contig7164_atContig7164--2e+0At2g40435-O.I.H.G.S.X.
0.7187.10.95HS04L14u_atHS04L14u--2e+0At2g21237unknown proteinO.I.H.G.S.X.
0.6784.70.95EBem10_SQ001_P13_s_atEBem10_SQ001_P13--8e+0At5g66550Maf family proteinO.I.H.G.S.X.
0.6178.70.93Contig17080_atContig17080--9e+0At5g64816unknown proteinO.I.H.G.S.X.
0.5572.00.95Contig18343_atContig18343--2e+0At2g05070LHCB2.2O.I.H.G.S.X.
0.4053.10.95Contig14437_atContig14437--1e+0At4g19640ARA7O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
42.899.9GSM282033Malting_day4_Harrington_rep4GSE11200Expression data from malting barley seedsLink to GEO
6.298.0GSM282031Malting_day1_Harrington_rep1GSE11200Expression data from malting barley seedsLink to GEO
4.997.1GSM282030Malting_day4_Harrington_rep2GSE11200Expression data from malting barley seedsLink to GEO
2.993.4GSM238430Embryo 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.692.3GSM238420Endosperm 0 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.692.3GSM382236Root_Control2GSE15295Mercury toxicity in barley rootsLink to GEO
2.692.3GSM146368Maythorpe Root Salt, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
2.692.3GSM238425Endosperm 48 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.591.9GSM238433Embryo 0 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.591.9GSM238432Embryo 0 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At2g40435, orthologous to the query gene, Contig7164_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
1.00100.0At2g40435818637-F:unknown;P:unknown;C:unknown;PO.I.H.G.S.X.
0.3846.7At1g76020843933-F:unknown;P:biological_process unknown;C:cell wall, vacuole;BPOMFO.I.H.G.S.X.
0.3643.6At1g65420842853unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOO.I.H.G.S.X.
0.3541.6At4g10000826591electron carrier/ protein disulfide oxidoreductaseF:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:chloroplast;BOPAFMO.I.H.G.S.X.
0.3439.8At1g29390839814COR314-TM2encodes a protein similar to the cold acclimation protein WCOR413 in wheat. Possibly targeted to thylakoid membrane.O.I.H.G.S.X.
0.3338.1At4g27390828847unknown proteinF:unknown;P:biological_process unknown;C:chloroplast;BPO.I.H.G.S.X.
0.3338.1At1g18360838417hydrolase, alpha/beta fold family proteinF:hydrolase activity;P:unknown;C:chloroplast;BOPMFVAO.I.H.G.S.X.
0.3235.7At1g74520843793ATHVA22APart of the AtHVA22a family. Protein expression is ABA- and stress-inducible.O.I.H.G.S.X.
0.3032.1At1g28140839708unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPMOO.I.H.G.S.X.
0.3032.1At1g10500837590ATCPISCA (chloroplast-localized IscA-like protein)Involved in chloroplast Fe-S cluster assembly. Located in the chloroplast stroma. Expressed preferentially in green tissues.O.I.H.G.S.X.
0.2930.3At3g46630823816-F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBOO.I.H.G.S.X.
0.2830.3At2g31070817659TCP10 (TCP DOMAIN PROTEIN 10)TCP family protein involved in heterchronic regulation of leaf differentiation.O.I.H.G.S.X.
0.2830.3At1g21065838701unknown proteinF:unknown;P:biological_process unknown;C:chloroplast;BOAFPMO.I.H.G.S.X.
0.2624.4At5g17520831618RCP1 (ROOT CAP 1)Encodes a maltose transporter that is expressed in leaves and roots. Mutations at the MEX1 locus cause accumulation of both starch and maltose in leaves, with maltose levels at least 40 times higher than that of wild-type. This gene encodes a protein located in the chloroplast envelope.O.I.H.G.S.X.
0.2624.4At2g20725816602CAAX amino terminal protease family proteinF:molecular_function unknown;P:proteolysis;C:chloroplast, membrane;BOPAO.I.H.G.S.X.
0.2624.4At2g26900817231bile acid:sodium symporter family proteinF:transporter activity, bile acid:sodium symporter activity;P:sodium ion transport, organic anion transport;C:membrane, chloroplast envelope;OBMPAFO.I.H.G.S.X.
0.2624.4At5g65840836713-F:molecular_function unknown;P:biological_process unknown;C:chloroplast stroma, chloroplast;PMBOFO.I.H.G.S.X.
0.2522.6At5g48590834916unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBOO.I.H.G.S.X.
0.2522.6At2g34310817992unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBO.I.H.G.S.X.
0.2420.7At1g20816838673unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.H.G.S.X.
0.2420.7At5g38290833811peptidyl-tRNA hydrolase family proteinF:aminoacyl-tRNA hydrolase activity;P:translation;C:chloroplast;BOPFMO.I.H.G.S.X.
0.2420.7At3g56330824800N2,N2-dimethylguanosine tRNA methyltransferase family proteinF:RNA binding, tRNA (guanine-N2-)-methyltransferase activity;P:tRNA processing;C:unknown;OMAFPBO.I.H.G.S.X.
0.2420.7At4g29070829028-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.2420.7At4g09900826580MES12 (METHYL ESTERASE 12)Encodes a protein predicted to act as a carboxylesterase. It has similarity to the SABP2 methyl salicylate esterase from tobacco. This protein does not act on methyl IAA, methyl JA, MeSA, MeGA4, or MEGA9 in vitro.O.I.H.G.S.X.
0.2420.7At3g28080822432nodulin MtN21 family proteinF:molecular_function unknown;P:biological_process unknown;C:membrane;PBOAMO.I.H.G.S.X.
0.2319.3At1g30210839901TCP24 (TEOSINTE BRANCHED1, CYCLOIDEA, AND PCF FAMILY 24)TCP family protein involved in heterochronic regulation of leaf differentiation.O.I.H.G.S.X.
0.2319.3At3g09250820081DNA binding / nucleaseF:DNA binding, nuclease activity;P:nucleotide-excision repair;C:chloroplast;BPOO.I.H.G.S.X.
0.2217.5At1g32070840099ATNSI (NUCLEAR SHUTTLE INTERACTING)Encodes a nuclear acetyltransferase (NSI)that interacts with the geminivirus movement protein NSP. This interaction is required for viral infection and systemic spread. Acetylates the viral coat protein (CP) in vitro, but not NSP. NSP inhibits NSI activity in vitro. NSI is highly transcribed in phloem and in xylem parenchyma cells, and in the apical meristem and guard cells, within young tissues in Arabidopsis, and its expression is turned off as tissues mature.O.I.H.G.S.X.
0.2217.5At5g18760831994zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:biological_process unknown;C:chloroplast;MPFOVO.I.H.G.S.X.
0.2217.5At1g69390843271ATMINE1 (Arabidopsis homologue of bacterial MinE 1)Encodes an Arabidopsis homologue of the bacterial MinE topological specificity factor ensuring correct division site placement. It is an essential integral component of the plastid division machinery.O.I.H.G.S.X.
0.2217.5At4g13220826938unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.H.G.S.X.
0.2217.5At3g52155824380-F:unknown;P:unknown;C:chloroplast;OBPO.I.H.G.S.X.
0.2115.8At1g64355842742unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOPO.I.H.G.S.X.
0.2115.8At1g72030843534GCN5-related N-acetyltransferase (GNAT) family proteinF:N-acetyltransferase activity;P:metabolic process;C:unknown;PBOO.I.H.G.S.X.
0.2115.8At5g14100831259ATNAP14member of NAP subfamilyO.I.H.G.S.X.
0.2115.8At5g14970831349unknown proteinF:unknown;P:unknown;C:unknown;BOPO.I.H.G.S.X.
0.2115.8At5g63100836430unknown proteinF:unknown;P:biological_process unknown;C:chloroplast;PBOFMO.I.H.G.S.X.
0.2115.8At5g17560831622BolA-like family proteinF:transcription regulator activity;P:biological_process unknown;C:chloroplast;OBPMFAO.I.H.G.S.X.
0.2115.8At4g33460829483ATNAP13member of NAP subfamilyO.I.H.G.S.X.
0.2014.4At3g24590822055PLSP1 (plastidic type I signal peptidase 1)Encodes a signal peptidase Plsp1 (plastidic type I signal peptidase 1). Required for thylakoid development. Functions in the maturation of the 75-kD component of the translocon at the outer envelope membrane of chloroplasts and oxygen evolving complex subunit 33 (OE33).O.I.H.G.S.X.
0.2014.4At1g63970842700ISPFEncodes a protein with 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity. The protein's activity was confirmed by heterologous expression of phenotypic complementation of the E. coli ispF mutant. Plants defective in this gene display an albino lethal phenotype.Homolog of E. coli IspFO.I.H.G.S.X.
0.2014.4At3g05410819705unknown proteinF:unknown;P:unknown;C:unknown;POO.I.H.G.S.X.
0.2014.4At4g26510828757ATP binding / kinase/ phosphotransferase, alcohol group as acceptor / uracil phosphoribosyltransferaseF:uracil phosphoribosyltransferase activity, phosphotransferase activity, alcohol group as acceptor, kinase activity, ATP binding;P:biosynthetic process, metabolic process;C:cellular_component unknown;BOMPFAVO.I.H.G.S.X.
0.1912.7At3g12685820449-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPO.I.H.G.S.X.
0.1912.7At4g22830828382unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOPO.I.H.G.S.X.
0.1912.7At1g53120841746RNA-binding S4 domain-containing proteinF:RNA binding;P:biological_process unknown;C:chloroplast;BOPMO.I.H.G.S.X.
0.1912.7At1g68660843196-F:molecular_function unknown;P:protein catabolic process;C:unknown;BOPO.I.H.G.S.X.
0.1912.7At1g43620840946UDP-glucose:sterol glucosyltransferase, putativeF:transferase activity, transferring glycosyl groups;P:lipid glycosylation, carbohydrate metabolic process, metabolic process;C:plasma membrane, vacuole;BMFPOVO.I.H.G.S.X.
0.1811.4At1g51100841533unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast, chloroplast stroma;PO.I.H.G.S.X.
0.1811.4At1g07700837283thioredoxin family proteinF:unknown;P:cell redox homeostasis;C:chloroplast stroma, chloroplast;MPOFBAVO.I.H.G.S.X.
0.1811.4At3g59870825157unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;OBPO.I.H.G.S.X.
0.1811.4At5g16140831471peptidyl-tRNA hydrolase family proteinF:aminoacyl-tRNA hydrolase activity;P:translation;C:unknown;BOPFMO.I.H.G.S.X.
0.1811.4At3g08920820041rhodanese-like domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBOMO.I.H.G.S.X.
0.1710.2At3g55250824691unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion, chloroplast, nucleus;PO.I.H.G.S.X.
0.1710.2At3g10620820231ATNUDX26 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 26)F:bis(5'-adenosyl)-pentaphosphatase activity, bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity;P:unknown;C:chloroplast;BOPMO.I.H.G.S.X.
0.1710.2At4g14910827149imidazoleglycerol-phosphate dehydratase, putativeF:imidazoleglycerol-phosphate dehydratase activity;P:histidine biosynthetic process;C:chloroplast;BOFAPMO.I.H.G.S.X.
0.1710.2At3g17930819775unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane;BOPO.I.H.G.S.X.
0.1710.2At5g33280833300chloride channel-like (CLC) protein, putativeF:anion channel activity, voltage-gated chloride channel activity;P:chloride transport;C:intracellular, membrane;BMOFPAO.I.H.G.S.X.
0.1710.2At4g35450829697AKR2 (ANKYRIN REPEAT-CONTAINING PROTEIN 2)Involved in targeting of chloroplast outer membrane proteins to the chloroplast. Double mutants of AKR2A and the highly homologous AKR2B have yellow leaves, significantly reduced chloroplast proteins, and no thylakoid membranes.O.I.H.G.S.X.
0.1710.2At2g31840817741-F:unknown;P:unknown;C:chloroplast;MOFPVBO.I.H.G.S.X.
0.168.8At3g50685824232unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;POO.I.H.G.S.X.
0.168.8At3g50270824189transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:unknown;PFO.I.H.G.S.X.
0.168.8At5g24020832467MINDEncodes a Ca2+ dependent ATPase required for correct positioning of the chloroplast division apparatus. Its ATPase activity is stimulated by AtMinE1, a topological specificity factor.O.I.H.G.S.X.
0.168.8At4g32900829426aminoacyl-tRNA hydrolaseF:aminoacyl-tRNA hydrolase activity;P:translation;C:unknown;MOAFPVO.I.H.G.S.X.
0.157.8At5g46110834652APE2 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2)mutant has Altered acclimation responses; Chloroplast Triose Phosphate TranslocatorO.I.H.G.S.X.
0.157.8At3g28760822508-F:molecular_function unknown;P:biological_process unknown;C:chloroplast;AOBPO.I.H.G.S.X.
0.157.8At3g06950819880tRNA pseudouridine synthase family proteinF:pseudouridine synthase activity;P:tRNA processing, pseudouridine synthesis;C:chloroplast;BOMFAPO.I.H.G.S.X.
0.157.8At4g20760827824short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAVO.I.H.G.S.X.
0.157.8At3g19810821518unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOPO.I.H.G.S.X.
0.146.8At4g11175826719translation initiation factor IF-1, chloroplast, putativeF:RNA binding, translation initiation factor activity;P:translational initiation;C:chloroplast;BOPO.I.H.G.S.X.
0.135.8At5g50280835093EMB1006 (embryo defective 1006)F:unknown;P:embryonic development ending in seed dormancy;C:chloroplast;POMFBAO.I.H.G.S.X.
0.135.8At1g55370841984carbohydrate binding / catalyticF:carbohydrate binding, catalytic activity;P:unknown;C:unknown;PO.I.H.G.S.X.
0.114.1At3g61970825370NGA2 (NGATHA2)F:transcription factor activity;P:flower development, leaf development;C:cellular_component unknown;PO.I.H.G.S.X.
0.114.1At4g10470826639unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.092.8At5g08320830728unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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