Co-expression analysis

Gene ID	Contig7135_at
Gene name
Homology with Arabidopsis	Similar to At2g41860: CPK14 (HF=4e-31)
Module size	6 genes
NF	0.13
%ile	16.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.56	74.3	0.85	Contig7135_at	Contig7135	-	-	4e-31	At2g41860	CPK14	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.88	HY03H15u_s_at	HY03H15u	-	-	9e-1	At3g61890	ATHB-12 (ARABIDOPSIS THALIANA HOMEOBOX 12)	O.I.	H.G.	S.X.	Please select
0.16	15.3	0.88	Contig11225_at	Contig11225	-	-	7e+0	At5g13220	JAZ10 (JASMONATE-ZIM-DOMAIN PROTEIN 10)	O.I.	H.G.	S.X.	Please select
0.16	15.3	0.85	Contig5275_at	Contig5275	-	-	3e-22	At3g13510	unknown protein	O.I.	H.G.	S.X.	Please select
0.07	5.8	0.85	Contig2961_at	Contig2961	-	-	5e-42	At5g36230	eIF4-gamma/eIF5/eIF2-epsilon domain-containing protein	O.I.	H.G.	S.X.	Please select
0.05	4.1	0.87	Contig5526_s_at	Contig5526	-	-	2e+0	At5g14320	30S ribosomal protein S13, chloroplast (CS13)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.4	97.5	GSM431547	pathogen isolates: Mock - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.3	96.4	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment
4.0	96.0	GSM261021	ABA-Control-rep1	GSE10328	ABA experiment
3.8	95.7	GSM238438	Embryo 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.8	95.7	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.7	95.5	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.6	95.3	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
3.6	95.3	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
3.5	95.1	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.5	95.1	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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