Co-expression analysis

Gene ID	Contig7090_s_at
Gene name
Homology with Arabidopsis	Similar to At3g13470: chaperonin, putative (HF=5e-40)
Module size	6 genes
NF	0.44
%ile	61.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	88.7	0.81	Contig7090_s_at	Contig7090	-	-	5e-40	At3g13470	chaperonin, putative	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.85	Contig1763_s_at	Contig1763	-	-	9e-1	At5g48290	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.83	Contig2843_at	Contig2843	-	-	4e-20	At3g06700	60S ribosomal protein L29 (RPL29A)	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.83	Contig7939_at	Contig7939	-	-	2e-34	At4g25550	protein binding	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.85	Contig12714_at	Contig12714	-	-	2e-7	At3g55030	PGPS2 (phosphatidylglycerolphosphate synthase 2)	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.83	Contig10483_at	Contig10483	-	-	5e-11	At1g14290	SBH2 (SPHINGOID BASE HYDROXYLASE 2)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
15.9	99.6	GSM215731	gibberellin treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
15.0	99.5	GSM215728	gibberellin treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
8.3	98.8	GSM71145	OWB-D unstress replicate 1	GSE3170	Barley single feature polymorphisms and drought stress gene expression
6.6	98.2	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
5.7	97.7	GSM71147	OWB-D unstress replicate 3	GSE3170	Barley single feature polymorphisms and drought stress gene expression
4.6	96.8	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.9	95.8	GSM71141	OWB-D stress replicate 3	GSE3170	Barley single feature polymorphisms and drought stress gene expression
3.5	95.1	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.4	94.8	GSM261042	before 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.2	94.3	GSM71156	Morex stress and unstress replicate 3	GSE3170	Barley single feature polymorphisms and drought stress gene expression

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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