Co-expression analysis

Gene ID Contig7088_at
Gene name alpha-amylase type A, EC 3.2.1.1
Homology with ArabidopsisSimilar to At4g25000: AMY1 (ALPHA-AMYLASE-LIKE) (HF=5e-2)
Module size 10 genes
NF 0.37
%ile 50.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6279.10.94Contig7088_atContig7088alpha-amylase type A, EC 3.2.1.1-5e-2At4g25000AMY1 (ALPHA-AMYLASE-LIKE)O.I.H.G.S.X.
0.5975.80.95Contig25363_atContig25363cytokinin dehydrogenase 2-3e-5At3g63440CKX6 (CYTOKININ OXIDASE/DEHYDROGENASE 6)O.I.H.G.S.X.
0.4255.20.96Contig6799_atContig6799cinnamoyl CoA reductase-8e-13At1g15950CCR1 (CINNAMOYL COA REDUCTASE 1)O.I.H.G.S.X.
0.3747.90.95HY09E16u_s_atHY09E16u--4e+0At5g02680ATP binding / aminoacyl-tRNA ligase/ nucleotide bindingO.I.H.G.S.X.
0.3647.10.95Contig11797_atContig11797--1e+1At4g21216unknown proteinO.I.H.G.S.X.
0.3342.60.95Contig7966_atContig7966--4e+0At2g42830SHP2 (SHATTERPROOF 2)O.I.H.G.S.X.
0.3037.00.95Contig18916_atContig18916--9e-1At5g09995unknown proteinO.I.H.G.S.X.
0.2427.20.95HF12C18r_atHF12C18r--1e+0At5g22410peroxidase, putativeO.I.H.G.S.X.
0.1919.60.96Contig7904_atContig7904--2e-4At5g01220SQD2 (sulfoquinovosyldiacylglycerol 2)O.I.H.G.S.X.
0.1919.60.96Contig9902_atContig9902--2e+0At5g35170adenylate kinase family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.298.5GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.897.0GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.396.4GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.795.5GSM238408Pericarp 4DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.494.8GSM238409Pericarp 4DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.494.8GSM238411Pericarp 8DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.294.3GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.294.3GSM238429Embryo 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.194.1GSM282036Malting_steeped_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
3.194.1GSM282033Malting_day4_Harrington_rep4GSE11200Expression data from malting barley seedsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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