Co-expression analysis

Gene ID	Contig7088_at
Gene name	alpha-amylase type A, EC 3.2.1.1
Homology with Arabidopsis	Similar to At4g25000: AMY1 (ALPHA-AMYLASE-LIKE) (HF=5e-2)
Module size	10 genes
NF	0.37
%ile	50.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.62	79.1	0.94	Contig7088_at	Contig7088	alpha-amylase type A, EC 3.2.1.1	-	5e-2	At4g25000	AMY1 (ALPHA-AMYLASE-LIKE)	O.I.	H.G.	S.X.	Please select
0.59	75.8	0.95	Contig25363_at	Contig25363	cytokinin dehydrogenase 2	-	3e-5	At3g63440	CKX6 (CYTOKININ OXIDASE/DEHYDROGENASE 6)	O.I.	H.G.	S.X.	Please select
0.42	55.2	0.96	Contig6799_at	Contig6799	cinnamoyl CoA reductase	-	8e-13	At1g15950	CCR1 (CINNAMOYL COA REDUCTASE 1)	O.I.	H.G.	S.X.	Please select
0.37	47.9	0.95	HY09E16u_s_at	HY09E16u	-	-	4e+0	At5g02680	ATP binding / aminoacyl-tRNA ligase/ nucleotide binding	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.95	Contig11797_at	Contig11797	-	-	1e+1	At4g21216	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.95	Contig7966_at	Contig7966	-	-	4e+0	At2g42830	SHP2 (SHATTERPROOF 2)	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.95	Contig18916_at	Contig18916	-	-	9e-1	At5g09995	unknown protein	O.I.	H.G.	S.X.	Please select
0.24	27.2	0.95	HF12C18r_at	HF12C18r	-	-	1e+0	At5g22410	peroxidase, putative	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.96	Contig7904_at	Contig7904	-	-	2e-4	At5g01220	SQD2 (sulfoquinovosyldiacylglycerol 2)	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.96	Contig9902_at	Contig9902	-	-	2e+0	At5g35170	adenylate kinase family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.2	98.5	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.8	97.0	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.3	96.4	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.7	95.5	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.4	94.8	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.4	94.8	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.2	94.3	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.2	94.3	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.1	94.1	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
3.1	94.1	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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