Co-expression analysis

Gene ID	Contig7079_at
Gene name
Homology with Arabidopsis	Similar to At2g18980: peroxidase, putative (HF=3e-3)
Module size	6 genes
NF	0.74
%ile	94.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.98	Contig7079_at	Contig7079	-	-	3e-3	At2g18980	peroxidase, putative	O.I.	H.G.	S.X.	Please select
0.91	98.1	0.98	Contig25706_at	Contig25706	-	-	3e-1	At2g37000	TCP family transcription factor, putative	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.99	Contig18000_at	Contig18000	knotted 1	-	1e-33	At1g62360	STM (SHOOT MERISTEMLESS)	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.98	Contig2160_at	Contig2160	-	-	2e-34	At4g38920	ATVHA-C3 (VACUOLAR-TYPE H(+)-ATPASE C3)	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.98	Contig3147_at	Contig3147	-	-	3e-4	At1g09940	HEMA2	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.98	Contig18164_at	Contig18164	-	-	1e-11	At1g20920	DEAD box RNA helicase, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.9	99.5	GSM419982	Seed_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
13.9	99.5	GSM440976	Control seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
13.2	99.4	GSM238417	Endosperm 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
11.3	99.3	GSM440979	Stressed seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
10.9	99.2	GSM440980	Stressed seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
10.9	99.2	GSM238416	Endosperm 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
10.0	99.1	GSM238419	Endosperm 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
9.3	99.0	GSM419981	Seed_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
9.3	99.0	GSM440975	Control seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress
8.4	98.8	GSM419983	Seed_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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