Co-expression analysis

Gene ID	Contig704_at
Gene name
Homology with Arabidopsis	Similar to At1g15140: oxidoreductase NAD-binding domain-containing protein (HF=1e-1)
Module size	6 genes
NF	0.07
%ile	9.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	90.8	0.85	Contig704_at	Contig704	-	-	1e-1	At1g15140	oxidoreductase NAD-binding domain-containing protein	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.85	Contig4489_s_at	Contig4489	-	-	3e+0	At2g29525	-	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.86	HW01K06u_s_at	HW01K06u	-	-	3e+0	At1g69660	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	O.I.	H.G.	S.X.	Please select
0.05	4.1	0.85	Contig7528_s_at	Contig7528	-	-	1e-2	At4g32400	SHS1 (SODIUM HYPERSENSITIVE 1)	O.I.	H.G.	S.X.	Please select
0.04	3.4	0.85	HK04G05r_at	HK04G05r	-	-	7e-1	At2g40935	unknown protein	O.I.	H.G.	S.X.	Please select
0.03	2.6	0.84	Contig23909_at	Contig23909	-	-	4e+0	At3g56250	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.2	99.4	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
9.3	99.0	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
7.9	98.7	GSM382235	Root_Control1	GSE15295	Mercury toxicity in barley roots
7.1	98.4	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots
6.2	98.0	GSM146379	Maythorpe shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.2	98.0	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
5.8	97.8	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.7	96.9	GSM382237	Root_Control3	GSE15295	Mercury toxicity in barley roots
3.9	95.8	GSM146373	Golden Promise shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.9	95.8	GSM146372	Golden Promise shoot Salt, biological rep 1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage