Co-expression analysis

Gene ID	Contig7032_at
Gene name
Homology with Arabidopsis	Similar to At5g64570: XYL4 (HF=1e-7)
Module size	6 genes
NF	0.62
%ile	84.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	80.3	0.89	Contig7032_at	Contig7032	-	-	1e-7	At5g64570	XYL4	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.90	Contig13936_at	Contig13936	-	-	4e+0	At2g32280	unknown protein	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.91	Contig25140_at	Contig25140	-	-	1e-10	At2g47570	60S ribosomal protein L18 (RPL18A)	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.91	HB20B10r_at	HB20B10r	-	-	8e+0	At5g13410	immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein	O.I.	H.G.	S.X.	Please select
0.47	62.2	0.91	Contig16930_at	Contig16930	-	-	1e+0	At3g20430	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.89	Contig4816_x_at	Contig4816	-	-	5e+0	At1g70700	TIFY7	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
15.3	99.6	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
9.7	99.0	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
9.3	99.0	GSM431547	pathogen isolates: Mock - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
8.9	98.9	GSM215730	Control (DMSO) treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
8.7	98.9	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
7.7	98.6	GSM363461	Control (C) - rep2	GSE14521	Late response to boron toxicity in barley leaves
7.4	98.5	GSM431572	pathogen isolates: Polymyxa betae - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
7.2	98.5	GSM431569	pathogen isolates: Mock inoculated control - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
7.0	98.4	GSM215727	Control (DMSO) treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
6.9	98.3	GSM363467	10 mM B(OH)3 treatment (10B) - rep2	GSE14521	Late response to boron toxicity in barley leaves

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage