Co-expression analysis

Gene ID Contig7030_at
Gene name
Homology with ArabidopsisSimilar to At1g15740: leucine-rich repeat family protein (HF=9e-1)
Module size 7 genes
NF 0.30
%ile 39.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7187.10.95Contig7030_atContig7030--9e-1At1g15740leucine-rich repeat family proteinO.I.H.G.S.X.
0.6077.30.95Contig9331_s_atContig9331--2e-2At5g41190-O.I.H.G.S.X.
0.3342.60.96Contig9332_atContig9332--6e+0At3g01470ATHB-1 (ARABIDOPSIS THALIANA HOMEOBOX 1)O.I.H.G.S.X.
0.2326.10.95Contig15096_s_atContig15096--2e-1At5g51720unknown proteinO.I.H.G.S.X.
0.2122.60.95Contig10110_s_atContig10110--4e-4At4g29870-O.I.H.G.S.X.
0.1919.60.95Contig167_x_atContig167--2e-8At1g08880H2AXAO.I.H.G.S.X.
0.1919.60.95Contig416_x_atContig416--5e-29At4g24190SHD (SHEPHERD)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.098.4GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
6.598.2GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
6.097.9GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
5.697.7GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.596.7GSM238429Embryo 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.296.3GSM238430Embryo 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.196.2GSM238408Pericarp 4DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.096.0GSM146377Maythorpe shoot Control, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
3.995.8GSM238413Endosperm 4DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.895.7GSM238409Pericarp 4DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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