Co-expression analysis

Gene ID	Contig7030_at
Gene name
Homology with Arabidopsis	Similar to At1g15740: leucine-rich repeat family protein (HF=9e-1)
Module size	7 genes
NF	0.30
%ile	39.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	87.1	0.95	Contig7030_at	Contig7030	-	-	9e-1	At1g15740	leucine-rich repeat family protein	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.95	Contig9331_s_at	Contig9331	-	-	2e-2	At5g41190	-	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.96	Contig9332_at	Contig9332	-	-	6e+0	At3g01470	ATHB-1 (ARABIDOPSIS THALIANA HOMEOBOX 1)	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.95	Contig15096_s_at	Contig15096	-	-	2e-1	At5g51720	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.95	Contig10110_s_at	Contig10110	-	-	4e-4	At4g29870	-	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.95	Contig167_x_at	Contig167	-	-	2e-8	At1g08880	H2AXA	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.95	Contig416_x_at	Contig416	-	-	5e-29	At4g24190	SHD (SHEPHERD)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.0	98.4	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.5	98.2	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.0	97.9	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.6	97.7	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.5	96.7	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.2	96.3	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.1	96.2	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.0	96.0	GSM146377	Maythorpe shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.9	95.8	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.8	95.7	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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