Co-expression analysis

Gene ID	Contig7024_at
Gene name
Homology with Arabidopsis	Similar to At5g55550: RNA recognition motif (RRM)-containing protein (HF=2e-4)
Module size	13 genes
NF	0.44
%ile	60.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.64	80.9	0.89	Contig7024_at	Contig7024	-	-	2e-4	At5g55550	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.91	Contig15498_at	Contig15498	-	-	1e+0	At4g28485	unknown protein	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.91	HS06J22u_s_at	HS06J22u	-	-	7e-5	At5g27520	PNC2 (PEROXISOMAL ADENINE NUCLEOTIDE CARRIER 2)	O.I.	H.G.	S.X.	Please select
0.54	70.3	0.90	Contig12777_at	Contig12777	-	-	4e-9	At1g04900	unknown protein	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.89	Contig3702_s_at	Contig3702	-	-	5e-3	At3g06860	MFP2 (MULTIFUNCTIONAL PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.92	Contig20381_at	Contig20381	-	-	3e-4	At1g22170	phosphoglycerate/bisphosphoglycerate mutase family protein	O.I.	H.G.	S.X.	Please select
0.41	53.9	0.91	Contig3906_s_at	Contig3906	-	-	1e-7	At5g41340	UBC4 (UBIQUITIN CONJUGATING ENZYME 4)	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.90	Contig4494_x_at	Contig4494	-	-	5e+0	At5g55508	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.92	HVSMEh0085G19f_at	HVSMEh0085G19f	-	-	3e+0	At1g75510	transcription initiation factor IIF beta subunit (TFIIF-beta) family protein	O.I.	H.G.	S.X.	Please select
0.37	47.9	0.91	Contig24268_at	Contig24268	-	-	2e+0	At5g57345	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.92	Contig14348_at	Contig14348	-	-	3e-3	At1g71692	AGL12 (AGAMOUS-LIKE 12)	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.91	HK05P12r_s_at	HK05P12r	-	-	2e+0	At2g06925	PLA2-ALPHA	O.I.	H.G.	S.X.	Please select
0.28	35.5	0.91	Contig14349_at	Contig14349	-	-	1e+1	Atmg00010	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
18.1	99.7	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
12.6	99.4	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds
10.9	99.2	GSM382237	Root_Control3	GSE15295	Mercury toxicity in barley roots
8.1	98.7	GSM130803	JA, biological rep1	GSE5605	Expression data from barley under salinity stress and JA treatment
4.3	96.4	GSM431547	pathogen isolates: Mock - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.1	96.2	GSM431550	pathogen isolates: Polymyxa graminis - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.0	96.0	GSM238439	Embryo 72 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.9	95.8	GSM372984	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.9	95.8	GSM238438	Embryo 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.7	95.5	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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