Co-expression analysis

Gene ID	Contig7023_at
Gene name
Homology with Arabidopsis	Similar to At5g65390: AGP7 (HF=3e+0)
Module size	9 genes
NF	0.47
%ile	64.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	84.7	0.95	Contig7023_at	Contig7023	-	-	3e+0	At5g65390	AGP7	O.I.	H.G.	S.X.	Please select
0.59	75.8	0.96	Contig24576_at	Contig24576	-	-	1e+0	At5g28295	unknown protein	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.96	Contig4218_at	Contig4218	-	-	1e-19	At1g26270	phosphatidylinositol 3- and 4-kinase family protein	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.97	Contig2828_at	Contig2828	-	-	2e-50	At5g63400	ADK1 (ADENYLATE KINASE 1)	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.96	Contig4791_at	Contig4791	-	-	4e+0	At5g45100	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.47	62.2	0.96	Contig398_s_at	Contig398	-	-	7e-13	At2g44050	COS1 (COI1 SUPPRESSOR1)	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.96	Contig665_s_at	Contig665	-	-	2e-20	At1g07820	histone H4	O.I.	H.G.	S.X.	Please select
0.28	35.5	0.97	Contig4893_at	Contig4893	-	-	2e-25	At3g02780	IPP2 (ISOPENTENYL PYROPHOSPHATE:DIMETHYLALLYL PYROPHOSPHATE ISOMERASE 2)	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.97	Contig2940_s_at	Contig2940	-	-	5e-6	At2g47380	cytochrome c oxidase subunit Vc family protein / COX5C family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.7	97.7	GSM71142	OWB-R stress replicate 1	GSE3170	Barley single feature polymorphisms and drought stress gene expression
5.7	97.7	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds
5.2	97.4	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
5.0	97.2	GSM440967	Stressed palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress
4.6	96.8	GSM440962	Stressed lemma_Rep3	GSE17669	Gene expression in the barley spike during drought stress
4.6	96.8	GSM71151	Barke stress and unstress replicate 1	GSE3170	Barley single feature polymorphisms and drought stress gene expression
4.4	96.6	GSM71143	OWB-R stress replicate 2	GSE3170	Barley single feature polymorphisms and drought stress gene expression
4.3	96.4	GSM440968	Stressed palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
4.3	96.4	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
4.1	96.2	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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