Co-expression analysis

Gene ID Contig6997_at
Gene name
Homology with ArabidopsisSimilar to At4g39140: protein binding / zinc ion binding (HF=2e-1)
Module size 8 genes
NF 0.61
%ile 83.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5774.90.88Contig6997_atContig6997--2e-1At4g39140protein binding / zinc ion bindingO.I.H.G.S.X.
0.6784.70.88Contig14037_atContig14037--5e+0At4g32090galactosyltransferaseO.I.H.G.S.X.
0.6380.30.88Contig15950_atContig15950--1e+0At1g15220CCMHO.I.H.G.S.X.
0.6380.30.89Contig11519_atContig11519--2e-4At1g66680AR401O.I.H.G.S.X.
0.5774.90.91Contig11041_atContig11041--1e+0At3g08940LHCB4.2 (light harvesting complex PSII)O.I.H.G.S.X.
0.5774.90.93Contig11168_atContig11168--1e-15At5g12480CPK7 (calmodulin-domain protein kinase 7)O.I.H.G.S.X.
0.5674.30.90Contig5149_atContig5149--4e-2At1g66670CLPP3O.I.H.G.S.X.
0.4863.20.89Contig699_s_atContig699--1e+0At3g07425unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
17.199.6GSM238417Endosperm 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
16.799.6GSM238416Endosperm 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.498.1GSM261079Albina e-16 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
5.297.4GSM372964genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep3GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
4.596.7GSM372981genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep2GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
4.596.7GSM372982genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep3GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
4.296.3GSM372985genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep3GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
4.196.2GSM372988genotype: 11542 - pathogen isolates: 5874 - time: 24 - rep3GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
4.196.2GSM372963genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep2GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
4.196.2GSM372967genotype: Mla6 - pathogen isolates: K1 - time: 20 - rep3GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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