Co-expression analysis

Gene ID Contig6995_at
Gene name
Homology with ArabidopsisSimilar to At5g57270: unknown protein (HF=2e-8)
Module size 6 genes
NF 0.80
%ile 96.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6178.70.97Contig6995_atContig6995--2e-8At5g57270unknown proteinO.I.H.G.S.X.
0.9198.10.97Contig4175_atContig4175--1e-19At3g07100protein transport protein Sec24, putativeO.I.H.G.S.X.
0.8092.50.97Contig4760_s_atContig4760--1e+0At4g38700disease resistance-responsive family proteinO.I.H.G.S.X.
0.7388.70.97Contig5297_atContig5297--4e-16At1g64550ATGCN3O.I.H.G.S.X.
0.7187.10.97Contig11464_atContig11464--6e-20At1g55740AtSIP1 (Arabidopsis thaliana seed imbibition 1)O.I.H.G.S.X.
0.6784.70.97Contig5117_atContig5117--8e-2At5g60500undecaprenyl pyrophosphate synthetase family protein / UPP synthetase family proteinO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6784.70.96Contig10102_atContig10102--9e-1At5g08130BIM1O.I.H.G.S.X.
0.6380.30.93HS08H22u_s_atHS08H22u--5e+0At4g27780ACBP2 (ACYL-COA BINDING PROTEIN ACBP 2)O.I.H.G.S.X.
0.6077.30.95Contig5978_atContig5978--2e+0At5g65070MAF4 (MADS AFFECTING FLOWERING 4)O.I.H.G.S.X.
0.6077.30.96EBem10_SQ003_I08_s_atEBem10_SQ003_I08--2e+0At1g07370PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN)O.I.H.G.S.X.
0.6077.30.96Contig4806_atContig4806--4e-1At4g08685SAH7O.I.H.G.S.X.
0.6077.30.96Contig21572_atContig21572--5e-1At5g48655zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.5674.30.96Contig6581_atContig6581--6e-2At3g26330CYP71B37O.I.H.G.S.X.
0.5572.00.94Contig17844_atContig17844--2e+0At3g13200EMB2769 (EMBRYO DEFECTIVE 2769)O.I.H.G.S.X.
0.5572.00.94Contig14122_atContig14122--3e-1At5g01881unknown proteinO.I.H.G.S.X.
0.5572.00.96Contig10908_atContig10908--4e-25At5g04560DME (DEMETER)O.I.H.G.S.X.
0.5369.70.96Contig7191_atContig7191--3e+0At5g17950unknown proteinO.I.H.G.S.X.
0.5369.70.96Contig8870_atContig8870--1e-10At5g56290PEX5 (PEROXIN 5)O.I.H.G.S.X.
0.5066.90.94Contig13429_atContig13429--1e+0At5g16550unknown proteinO.I.H.G.S.X.
0.5066.90.95Contig2670_x_atContig2670--5e-20At4g25820XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9)O.I.H.G.S.X.
0.5066.90.96Contig14405_atContig14405--7e-1At1g71050heavy-metal-associated domain-containing protein / copper chaperone (CCH)-relatedO.I.H.G.S.X.
0.5066.90.96Contig14361_atContig14361--2e-1At2g11005glycine-rich proteinO.I.H.G.S.X.
0.5066.90.96Contig7278_atContig7278--7e-2At2g45980unknown proteinO.I.H.G.S.X.
0.5066.90.96Contig7546_s_atContig7546--1e+0At1g63950heavy-metal-associated domain-containing proteinO.I.H.G.S.X.
0.5066.90.97Contig725_s_atContig725--1e-15At1g21750ATPDIL1-1 (PDI-LIKE 1-1)O.I.H.G.S.X.
0.4863.20.96Contig5161_s_atContig5161--9e-3At1g54860unknown proteinO.I.H.G.S.X.
0.4661.00.95Contig9977_atContig9977--2e-2At5g49550unknown proteinO.I.H.G.S.X.
0.4458.90.95Contig15529_atContig15529--7e-19At5g39900GTP binding / GTPase/ translation elongation factorO.I.H.G.S.X.
0.4458.90.95Contig14780_atContig14780--3e-1At2g35960NHL12O.I.H.G.S.X.
0.4458.90.95Contig14726_atContig14726--2e+0At3g10020unknown proteinO.I.H.G.S.X.
0.4458.90.96Contig3532_atContig3532--8e+0At4g32605-O.I.H.G.S.X.
0.4458.90.96Contig12105_atContig12105--2e-2At3g52640nicastrin-relatedO.I.H.G.S.X.
0.4458.90.96Contig10043_atContig10043--8e-38At5g13280AK-LYS1 (ASPARTATE KINASE 1)O.I.H.G.S.X.
0.4458.90.96Contig9328_s_atContig9328--5e-7At1g60660CB5LP (CYTOCHROME B5-LIKE PROTEIN)O.I.H.G.S.X.
0.4458.90.96HVSMEc0019C19f_atHVSMEc0019C19f--0Atcg00020-O.I.H.G.S.X.
0.4356.40.96Contig18254_atContig18254--2e-1At5g26220ChaC-like family proteinO.I.H.G.S.X.
0.4255.20.94Contig19730_atContig19730--1e+0At3g49570LSU3 (RESPONSE TO LOW SULFUR 3)O.I.H.G.S.X.
0.4255.20.94Contig10644_atContig10644--5e-79At4g00660DEAD/DEAH box helicase, putativeO.I.H.G.S.X.
0.4255.20.95Contig25599_atContig25599--4e+0At4g10595LCR2 (Low-molecular-weight cysteine-rich 2)O.I.H.G.S.X.
0.4255.20.95Contig1460_x_atContig1460--6e+0At5g53120SPDS3 (SPERMIDINE SYNTHASE 3)O.I.H.G.S.X.
0.4053.10.94Contig21104_atContig21104--1e-3At1g23030armadillo/beta-catenin repeat family protein / U-box domain-containing proteinO.I.H.G.S.X.
0.4053.10.94Contig12397_atContig12397--4e-2At2g24590splicing factor, putativeO.I.H.G.S.X.
0.4053.10.95Contig13169_atContig13169--2e-24At1g76860small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putativeO.I.H.G.S.X.
0.4053.10.96Contig22535_atContig22535--7e+0At5g06330hairpin-responsive protein, putative (HIN1)O.I.H.G.S.X.
0.4053.10.96Contig6232_atContig6232--8e-1At2g01720ribophorin I family proteinO.I.H.G.S.X.
0.3849.50.95Contig7098_atContig7098--1e-2At1g56360PAP6 (PURPLE ACID PHOSPHATASE 6)O.I.H.G.S.X.
0.3647.10.92HT06H20u_atHT06H20u--4e+0At4g27760FEY (FOREVER YOUNG)O.I.H.G.S.X.
0.3647.10.95Contig7665_atContig7665--5e-9At3g14830unknown proteinO.I.H.G.S.X.
0.3647.10.95Contig9027_atContig9027--1e+1At4g09830-O.I.H.G.S.X.
0.3647.10.96Contig18385_atContig18385--2e+0Atmg01170-O.I.H.G.S.X.
0.3342.60.94Contig1180_atContig1180--4e-20At1g07790HTB1O.I.H.G.S.X.
0.3342.60.94Contig9005_atContig9005--1e-14At3g05280integral membrane Yip1 family proteinO.I.H.G.S.X.
0.3342.60.94HVSMEa0015B19r2_x_atHVSMEa0015B19r2--4e+0At5g04070short-chain dehydrogenase/reductase (SDR) family proteinO.I.H.G.S.X.
0.3342.60.94Contig19427_atContig19427--2e+1At5g65220ribosomal protein L29 family proteinO.I.H.G.S.X.
0.3342.60.96Contig1794_s_atContig1794--2e-155At4g13940MEE58 (MATERNAL EFFECT EMBRYO ARREST 58)O.I.H.G.S.X.
0.3342.60.97Contig12398_atContig12398--2e-1At2g31240tetratricopeptide repeat (TPR)-containing proteinO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.298.5GSM238435Embryo 24 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.998.3GSM238434Embryo 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.297.4GSM238436Embryo 48 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.396.4GSM282032Malting_day1_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO
4.296.3GSM213441Barley seeds control in Hoagland solution for 12hrGSE8618P. aeruginosa virulent factor to barleyLink to GEO
4.296.3GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.296.3GSM238432Embryo 0 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.096.0GSM238415Endosperm 8DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.995.8GSM282037Malting_day1_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
3.895.7GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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