Co-expression analysis

Gene ID Contig6995_at
Gene name
Homology with ArabidopsisSimilar to At5g57270: unknown protein (HF=2e-8)
Module size 6 genes
NF 0.80
%ile 96.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6178.70.97Contig6995_atContig6995--2e-8At5g57270unknown proteinO.I.H.G.S.X.
0.9198.10.97Contig4175_atContig4175--1e-19At3g07100protein transport protein Sec24, putativeO.I.H.G.S.X.
0.8092.50.97Contig4760_s_atContig4760--1e+0At4g38700disease resistance-responsive family proteinO.I.H.G.S.X.
0.7388.70.97Contig5297_atContig5297--4e-16At1g64550ATGCN3O.I.H.G.S.X.
0.7187.10.97Contig11464_atContig11464--6e-20At1g55740AtSIP1 (Arabidopsis thaliana seed imbibition 1)O.I.H.G.S.X.
0.6784.70.97Contig5117_atContig5117--8e-2At5g60500undecaprenyl pyrophosphate synthetase family protein / UPP synthetase family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.298.5GSM238435Embryo 24 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.998.3GSM238434Embryo 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.297.4GSM238436Embryo 48 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.396.4GSM282032Malting_day1_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO
4.296.3GSM213441Barley seeds control in Hoagland solution for 12hrGSE8618P. aeruginosa virulent factor to barleyLink to GEO
4.296.3GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.296.3GSM238432Embryo 0 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.096.0GSM238415Endosperm 8DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.995.8GSM282037Malting_day1_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
3.895.7GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os02g0175500, orthologous to the query gene, Contig6995_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5978.0Os02g0175500At5g57270-Arabidopsis protein of unknown function DUF266family protein7e-11At4g25870unknown proteinO.I.H.G.S.X.
0.8094.6Os04g0421900At5g57270-Conserved hypothetical protein6e-22At1g76850SEC5A (EXOCYST COMPLEX COMPONENT SEC5)O.I.H.G.S.X.
0.6787.2Os07g0620300At5g57270-Clathrin adaptor complex, medium chain familyprotein8e-23At4g24550clathrin adaptor complexes medium subunit family proteinO.I.H.G.S.X.
0.5777.0Os02g0554300At5g57270-Synaptojanin, N-terminal domain containing protein5e-9At3g51460RHD4 (ROOT HAIR DEFECTIVE4)O.I.H.G.S.X.
0.5573.7Os04g0606400At5g57270-Mannosyl-oligosaccharide 1,2-alpha-mannosidase (EC3.2.1.113)4e-22At3g21160mannosyl-oligosaccharide 1,2-alpha-mannosidase, putativeO.I.H.G.S.X.
0.4051.1Os06g0198800At5g57270-Synaptobrevin family protein3e-13At1g11890SEC22O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage