Co-expression analysis

Gene ID	Contig6980_at
Gene name
Homology with Arabidopsis	Similar to At4g02510: TOC159 (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 159) (HF=2e-4)
Module size	6 genes
NF	0.40
%ile	55.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	80.3	0.92	Contig6980_at	Contig6980	-	-	2e-4	At4g02510	TOC159 (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 159)	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.93	Contig7016_s_at	Contig7016	-	-	2e+0	At2g47610	60S ribosomal protein L7A (RPL7aA)	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.94	Contig5887_at	Contig5887	-	-	7e-2	At3g22360	AOX1B	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.92	Contig11047_at	Contig11047	-	-	3e-12	At2g27900	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.92	Contig15743_s_at	Contig15743	-	-	2e-1	At1g56600	AtGolS2 (Arabidopsis thaliana galactinol synthase 2)	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.91	Contig12384_s_at	Contig12384	-	-	5e+0	At5g05150	AtATG18e	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.4	97.5	GSM161148	7% SWC rep3	GSE6990	Barley drought stress
3.7	95.5	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.4	94.8	GSM372985	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.0	93.8	GSM431569	pathogen isolates: Mock inoculated control - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
3.0	93.8	GSM160815	drought control rep3	GSE6990	Barley drought stress
2.9	93.4	GSM372984	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.8	93.1	GSM431572	pathogen isolates: Polymyxa betae - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
2.8	93.1	GSM261064	Xantha s-46 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.8	93.1	GSM440966	Stressed palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
2.8	93.1	GSM398256	Martin_3d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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