Co-expression analysis

Gene ID	Contig6953_at
Gene name
Homology with Arabidopsis	Similar to At5g24440: CID13 (CTC-Interacting Domain 13) (HF=3e+0)
Module size	6 genes
NF	0.16
%ile	19.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	90.8	0.92	Contig6953_at	Contig6953	-	-	3e+0	At5g24440	CID13 (CTC-Interacting Domain 13)	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.92	Contig6951_at	Contig6951	-	-	4e-13	At1g65290	mtACP2 (mitochondrial acyl carrier protein 2)	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.94	HU09I04u_s_at	HU09I04u	-	-	4e+0	At5g06510	NF-YA10 (NUCLEAR FACTOR Y, SUBUNIT A10)	O.I.	H.G.	S.X.	Please select
0.13	11.6	0.92	Contig18908_at	Contig18908	-	-	5e-1	At1g64490	unknown protein	O.I.	H.G.	S.X.	Please select
0.08	6.5	0.93	Contig9629_at	Contig9629	-	-	6e-1	At4g18620	-	O.I.	H.G.	S.X.	Please select
0.07	5.8	0.93	Contig11942_at	Contig11942	-	-	2e-5	At1g19130	-	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.4	99.3	GSM238418	Endosperm 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
10.4	99.2	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
8.9	98.9	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
7.2	98.5	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.5	97.6	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.1	97.3	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.9	97.1	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.7	96.9	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
4.6	96.8	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.5	96.7	GSM238416	Endosperm 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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