Co-expression analysis

Gene ID	Contig6952_at
Gene name
Homology with Arabidopsis	Similar to At5g08080: SYP132 (SYNTAXIN OF PLANTS 132) (HF=4e-5)
Module size	33 genes
NF	0.52
%ile	72.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.81	92.8	0.89	Contig6952_at	Contig6952	-	-	4e-5	At5g08080	SYP132 (SYNTAXIN OF PLANTS 132)	O.I.	H.G.	S.X.	Please select
0.68	85.1	0.93	Contig11320_s_at	Contig11320	-	-	1e+0	At5g11090	serine-rich protein-related	O.I.	H.G.	S.X.	Please select
0.68	85.1	0.94	Contig11410_at	Contig11410	-	-	4e-1	At5g47150	YDG/SRA domain-containing protein	O.I.	H.G.	S.X.	Please select
0.66	81.5	0.95	Contig7600_at	Contig7600	-	-	2e-1	At5g41570	WRKY24	O.I.	H.G.	S.X.	Please select
0.65	81.4	0.93	Contig2867_at	Contig2867	-	-	8e-14	At5g01320	pyruvate decarboxylase, putative	O.I.	H.G.	S.X.	Please select
0.64	80.9	0.92	Contig3004_at	Contig3004	-	-	1e-75	At3g14290	PAE2	O.I.	H.G.	S.X.	Please select
0.63	80.3	0.92	Contig11690_at	Contig11690	-	-	9e-13	At4g09810	transporter-related	O.I.	H.G.	S.X.	Please select
0.63	80.3	0.94	HA12K13u_s_at	HA12K13u	-	-	2e-19	At1g52740	HTA9 (HISTONE H2A PROTEIN 9)	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.91	Contig12200_at	Contig12200	-	-	1e-23	At2g04350	long-chain-fatty-acid--CoA ligase family protein / long-chain acyl-CoA synthetase family protein (LACS8)	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.93	HA12K13u_at	HA12K13u	-	-	2e-19	At1g52740	HTA9 (HISTONE H2A PROTEIN 9)	O.I.	H.G.	S.X.	Please select
0.59	75.8	0.95	Contig6716_at	Contig6716	-	-	2e-25	At4g31780	MGD1 (MONOGALACTOSYL DIACYLGLYCEROL SYNTHASE 1)	O.I.	H.G.	S.X.	Please select
0.58	74.9	0.93	Contig11623_at	Contig11623	-	-	2e-1	At5g11330	monooxygenase family protein	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.96	Contig11272_at	Contig11272	-	-	8e-2	At5g40080	60S ribosomal protein-related	O.I.	H.G.	S.X.	Please select
0.52	68.3	0.94	Contig3389_at	Contig3389	-	-	2e-1	At3g60530	zinc finger (GATA type) family protein	O.I.	H.G.	S.X.	Please select
0.52	68.3	0.94	Contig19601_at	Contig19601	-	-	5e+0	At5g01225	unknown protein	O.I.	H.G.	S.X.	Please select
0.51	67.5	0.95	Contig17502_at	Contig17502	-	-	2e+0	At4g03965	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.51	67.5	0.91	Contig5711_at	Contig5711	-	-	1e-7	At1g21900	emp24/gp25L/p24 family protein	O.I.	H.G.	S.X.	Please select
0.51	67.5	0.93	Contig17501_at	Contig17501	-	-	3e-2	At5g67520	adenylylsulfate kinase, putative	O.I.	H.G.	S.X.	Please select
0.51	67.5	0.93	Contig11640_at	Contig11640	-	-	1e-1	At4g11660	AT-HSFB2B	O.I.	H.G.	S.X.	Please select
0.49	63.7	0.95	Contig11701_at	Contig11701	-	-	1e+0	At3g04040	unknown protein	O.I.	H.G.	S.X.	Please select
0.49	63.7	0.92	Contig9603_at	Contig9603	-	-	3e+0	At5g61230	ankyrin repeat family protein	O.I.	H.G.	S.X.	Please select
0.47	62.2	0.95	Contig15403_at	Contig15403	-	-	6e-7	At3g13065	SRF4 (STRUBBELIG-RECEPTOR FAMILY 4)	O.I.	H.G.	S.X.	Please select
0.47	62.2	0.94	Contig11560_at	Contig11560	-	-	9e-4	At5g06260	nucleolar protein-related	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.93	EBro01_SQ003_E14_s_at	EBro01_SQ003_E14	-	-	1e+1	At3g19150	KRP6 (KIP-RELATED PROTEIN 6)	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.94	Contig11241_at	Contig11241	-	-	3e+0	At5g03400	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.92	Contig10203_at	Contig10203	-	-	2e+0	At1g17190	ATGSTU26 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 26)	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.95	Contig19850_at	Contig19850	-	-	4e-2	At5g24680	-	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.94	Contig11670_at	Contig11670	-	-	4e-2	At4g35430	unknown protein	O.I.	H.G.	S.X.	Please select
0.42	55.2	0.94	Contig3400_at	Contig3400	-	-	1e-28	At3g54560	HTA11	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.91	Contig3212_s_at	Contig3212	-	-	4e-3	At5g13700	ATPAO1 (ARABIDOPSIS THALIANA POLYAMINE OXIDASE 1)	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.92	HY10N04u_s_at	HY10N04u	-	-	6e-1	At3g17860	JAZ3 (JASMONATE-ZIM-DOMAIN PROTEIN 3)	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.93	Contig4883_at	Contig4883	-	-	2e-4	At4g38220	aminoacylase, putative / N-acyl-L-amino-acid amidohydrolase, putative	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.92	Contig6601_at	Contig6601	-	-	3e-9	At1g29550	eukaryotic translation initiation factor 4E, putative / eIF-4E, putative / eIF4E, putative / mRNA cap-binding protein, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.9	98.7	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
7.2	98.5	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
7.1	98.4	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.2	94.3	GSM71145	OWB-D unstress replicate 1	GSE3170	Barley single feature polymorphisms and drought stress gene expression
3.0	93.8	GSM71147	OWB-D unstress replicate 3	GSE3170	Barley single feature polymorphisms and drought stress gene expression
2.8	93.1	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.6	92.3	GSM146377	Maythorpe shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
2.6	92.3	GSM372981	genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.4	91.4	GSM71157	Steptoe stress and unstress replicate 1	GSE3170	Barley single feature polymorphisms and drought stress gene expression
2.4	91.4	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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