Co-expression analysis

Gene ID Contig6946_at
Gene name
Homology with ArabidopsisSimilar to At5g01200: myb family transcription factor (HF=1e-5)
Module size 6 genes
NF 0.58
%ile 80.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6784.70.96Contig6946_atContig6946--1e-5At5g01200myb family transcription factorO.I.H.G.S.X.
0.7187.10.96Contig12065_atContig12065--1e+0At5g61670-O.I.H.G.S.X.
0.6784.70.96Contig7149_atContig7149--7e-1At1g04690KAB1 (POTASSIUM CHANNEL BETA SUBUNIT)O.I.H.G.S.X.
0.6784.70.97Contig6329_atContig6329--3e-31At2g40490HEME2O.I.H.G.S.X.
0.5066.90.96Contig8876_atContig8876--2e+0At3g25577unknown proteinO.I.H.G.S.X.
0.2630.40.96Contig11789_atContig11789--2e+0At3g04620nucleic acid bindingO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.499.0GSM3634655 mM B(OH)3 treatment (5B) - rep3GSE14521Late response to boron toxicity in barley leavesLink to GEO
6.798.3GSM363461Control (C) - rep2GSE14521Late response to boron toxicity in barley leavesLink to GEO
5.397.4GSM238418Endosperm 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.595.1GSM238419Endosperm 25DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.294.3GSM238408Pericarp 4DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.093.8GSM238411Pericarp 8DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.893.1GSM146368Maythorpe Root Salt, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
2.893.1GSM261070Albina f-17 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
2.893.1GSM419972Lemma_Rep1GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
2.893.1GSM440957Control lemma_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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