Co-expression analysis

Gene ID Contig6905_s_at
Gene name
Homology with ArabidopsisSimilar to At4g19620: unknown protein (HF=2e+0)
Module size 7 genes
NF 0.64
%ile 85.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5268.30.97Contig6905_s_atContig6905--2e+0At4g19620unknown proteinO.I.H.G.S.X.
0.9298.40.97HW08B21u_s_atHW08B21u--1e+1At5g23903unknown proteinO.I.H.G.S.X.
0.6178.70.97Contig22861_atContig22861--7e+0At3g59880unknown proteinO.I.H.G.S.X.
0.6178.70.97Contig16073_atContig16073--3e-2At5g37200zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.5572.00.97Contig15424_atContig15424--2e+1At1g03950VPS2.3 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 2.3)O.I.H.G.S.X.
0.5066.90.97HVSMEb0001F21r2_x_atHVSMEb0001F21r2--4e+0At5g48170SLY2 (SLEEPY2)O.I.H.G.S.X.
0.4661.00.97Contig2940_s_atContig2940--5e-6At2g47380cytochrome c oxidase subunit Vc family protein / COX5C family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.799.2GSM282031Malting_day1_Harrington_rep1GSE11200Expression data from malting barley seedsLink to GEO
8.498.8GSM282036Malting_steeped_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
6.898.3GSM440979Stressed seed_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO
6.798.3GSM238435Embryo 24 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.997.9GSM419982Seed_Rep2GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
5.997.9GSM440976Control seed_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO
5.997.9GSM440978Stressed seed_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO
5.497.5GSM440980Stressed seed_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
5.497.5GSM419983Seed_Rep3GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
5.497.5GSM440977Control seed_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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