Co-expression analysis

Gene ID	Contig6890_at
Gene name
Homology with Arabidopsis	Similar to At5g34581: hydroxyproline-rich glycoprotein family protein (HF=4e+0)
Module size	6 genes
NF	0.64
%ile	85.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	78.7	0.96	Contig6890_at	Contig6890	-	-	4e+0	At5g34581	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.83	94.0	0.97	Contig12594_at	Contig12594	-	-	3e+0	At5g11990	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.97	rbags1e22_s_at	rbags1e22	-	-	3e-1	At3g56360	unknown protein	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.97	Contig9632_at	Contig9632	-	-	1e-1	At1g78370	ATGSTU20 (GLUTATHIONE S-TRANSFERASE TAU 20)	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.97	Contig13332_at	Contig13332	-	-	2e+0	At1g68280	thioesterase-related	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.97	Contig416_x_at	Contig416	-	-	5e-29	At4g24190	SHD (SHEPHERD)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.8	97.0	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
4.0	96.0	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
3.7	95.5	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
3.3	94.6	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots
3.1	94.1	GSM382237	Root_Control3	GSE15295	Mercury toxicity in barley roots
3.0	93.8	GSM382235	Root_Control1	GSE15295	Mercury toxicity in barley roots
2.9	93.4	GSM261069	Albina f-17 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.8	93.1	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds
2.6	92.3	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
2.5	91.9	GSM261072	Albina f-17 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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