Co-expression analysis

Gene ID	Contig6865_at
Gene name
Homology with Arabidopsis	Similar to At4g00360: CYP86A2 (CYTOCHROME P450 86 A2) (HF=2e-7)
Module size	6 genes
NF	0.37
%ile	50.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.96	Contig6865_at	Contig6865	-	-	2e-7	At4g00360	CYP86A2 (CYTOCHROME P450 86 A2)	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.96	Contig5475_at	Contig5475	-	-	5e+0	At5g05960	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.96	Contig10661_at	Contig10661	-	-	2e+0	At3g15680	zinc finger (Ran-binding) family protein	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.96	Contig11477_at	Contig11477	-	-	8e-5	At1g79040	PSBR (photosystem II subunit R)	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.96	Contig5316_at	Contig5316	-	-	5e-1	At1g11572	-	O.I.	H.G.	S.X.	Please select
0.16	15.3	0.96	Contig17511_at	Contig17511	-	-	8e+0	At5g55750	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.8	99.1	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
9.1	98.9	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.5	98.2	GSM431573	pathogen isolates: Polymyxa betae - rep3	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
5.7	97.7	GSM431570	pathogen isolates: Mock inoculated control - rep3	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
4.9	97.1	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.9	97.1	GSM431548	pathogen isolates: Mock - rep3	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.8	97.0	GSM431568	pathogen isolates: Mock inoculated control - rep1	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
4.8	97.0	GSM431571	pathogen isolates: Polymyxa betae - rep1	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
4.7	96.9	GSM431572	pathogen isolates: Polymyxa betae - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
4.6	96.8	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

A co-expression module including the grape gene, 1621973_at, orthologous to the query gene, Contig6865_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.97	99.9	1621973_at	At4g00360	-	-	8e+0	At5g24593	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	81.9	1612542_at	At4g00360	hypothetical protein LOC100267934	-	3e-4	At3g18050	unknown protein	O.I.	H.G.	S.X.	Please select
0.59	80.6	1620729_at	At4g00360	hypothetical protein LOC100242723	-	3e-8	At5g22980	scpl47 (serine carboxypeptidase-like 47)	O.I.	H.G.	S.X.	Please select
0.56	79.4	1606761_s_at	At4g00360	UPF0497 membrane protein 4	-	1e+1	At5g41530	-	O.I.	H.G.	S.X.	Please select
0.52	73.9	1607381_at	At4g00360	hypothetical protein LOC100245212	-	7e-5	At4g27700	rhodanese-like domain-containing protein	O.I.	H.G.	S.X.	Please select
0.49	69.3	1608376_at	At4g00360	similar to ribosomal protein S17	-	3e-29	At1g48350	ribosomal protein L18 family protein	O.I.	H.G.	S.X.	Please select
0.48	68.8	1610525_at	At4g00360	hypothetical protein LOC100260680	-	2e-15	At1g50900	-	O.I.	H.G.	S.X.	Please select
0.47	67.7	1608433_at	At4g00360	hypothetical protein LOC100264932	-	3e-2	At3g52960	peroxiredoxin type 2, putative	O.I.	H.G.	S.X.	Please select
0.47	67.7	1617425_at	At4g00360	hypothetical protein LOC100242172	-	2e-12	At5g21920	YGGT family protein	O.I.	H.G.	S.X.	Please select
0.46	66.5	1609873_at	At4g00360	hypothetical protein LOC100247523	-	2e-69	At1g67280	lactoylglutathione lyase, putative / glyoxalase I, putative	O.I.	H.G.	S.X.	Please select
0.45	64.6	1606656_at	At4g00360	hypothetical protein LOC100262729	-	1e-1	At4g22460	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.44	64.1	1617654_at	At4g00360	hypothetical protein LOC100261644	-	6e+0	At3g50685	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	61.5	1611924_at	At4g00360	hypothetical protein LOC100244683	-	2e-9	At1g55670	PSAG (PHOTOSYSTEM I SUBUNIT G)	O.I.	H.G.	S.X.	Please select
0.42	60.1	1613266_at	At4g00360	hypothetical protein LOC100250168	-	2e+0	At3g16690	nodulin MtN3 family protein	O.I.	H.G.	S.X.	Please select
0.42	60.1	1613729_at	At4g00360	hypothetical protein LOC100251530	-	1e-25	At1g79850	RPS17 (RIBOSOMAL PROTEIN S17)	O.I.	H.G.	S.X.	Please select
0.40	57.7	1618209_at	At4g00360	-	-	3e-17	At4g09010	APX4 (ASCORBATE PEROXIDASE 4)	O.I.	H.G.	S.X.	Please select
0.40	57.7	1608822_at	At4g00360	hypothetical protein LOC100246732	-	8e-6	At3g46780	PTAC16 (PLASTID TRANSCRIPTIONALLY ACTIVE 16)	O.I.	H.G.	S.X.	Please select
0.39	54.9	1608391_at	At4g00360	hypothetical protein LOC100255376	-	5e-12	At1g60230	radical SAM domain-containing protein	O.I.	H.G.	S.X.	Please select
0.39	54.9	1611464_at	At4g00360	hypothetical protein LOC100255844	-	2e-8	At1g45474	LHCA5	O.I.	H.G.	S.X.	Please select
0.38	53.6	1613428_at	At4g00360	hypothetical protein LOC100240959	-	2e-3	At4g21280	oxygen-evolving enhancer protein 3, chloroplast, putative (PSBQ1) (PSBQ)	O.I.	H.G.	S.X.	Please select
0.38	53.6	1615822_at	At4g00360	hypothetical protein LOC100260599	-	3e-92	At5g54270	LHCB3 (LIGHT-HARVESTING CHLOROPHYLL B-BINDING PROTEIN 3)	O.I.	H.G.	S.X.	Please select
0.38	53.6	1617840_at	At4g00360	hypothetical protein LOC100253425	-	5e-16	At4g01150	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	53.6	1617311_at	At4g00360	hypothetical protein LOC100257045	-	1e-16	At4g24770	RBP31 (31-KDA RNA BINDING PROTEIN)	O.I.	H.G.	S.X.	Please select
0.37	51.7	1609530_at	At4g00360	hypothetical protein LOC100248460	-	1e+0	At2g29180	unknown protein	O.I.	H.G.	S.X.	Please select
0.34	46.8	1617786_at	At4g00360	hypothetical protein LOC100263887	-	2e+0	At5g34581	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.33	45.7	1615322_at	At4g00360	hypothetical protein LOC100250934	-	3e-5	At5g19940	plastid-lipid associated protein PAP-related / fibrillin-related	O.I.	H.G.	S.X.	Please select
0.32	43.1	1607422_s_at	At4g00360	hypothetical protein LOC100244165	-	4e-26	At2g33450	50S ribosomal protein L28, chloroplast (CL28)	O.I.	H.G.	S.X.	Please select
0.32	43.1	1614593_at	At4g00360	hypothetical protein LOC100246457	-	2e-96	At4g10340	LHCB5 (LIGHT HARVESTING COMPLEX OF PHOTOSYSTEM II 5)	O.I.	H.G.	S.X.	Please select
0.30	39.4	1607453_at	At4g00360	hypothetical protein LOC100243309	-	6e-3	At5g08050	-	O.I.	H.G.	S.X.	Please select
0.29	37.7	1622803_at	At4g00360	hypothetical protein LOC100245108	-	8e-24	At5g13510	ribosomal protein L10 family protein	O.I.	H.G.	S.X.	Please select
0.28	37.7	1614439_at	At4g00360	-	-	3e-55	At1g48520	GATB (GLU-ADT SUBUNIT B)	O.I.	H.G.	S.X.	Please select
0.28	37.7	1614409_at	At4g00360	hypothetical protein LOC100266036	-	1e-72	At3g61470	LHCA2	O.I.	H.G.	S.X.	Please select
0.28	37.7	1611364_at	At4g00360	hypothetical protein LOC100247987	-	1e-35	At1g31330	PSAF (photosystem I subunit F)	O.I.	H.G.	S.X.	Please select
0.26	32.0	1608871_at	At4g00360	hypothetical protein LOC100266016	-	1e-16	At2g35500	shikimate kinase-related	O.I.	H.G.	S.X.	Please select
0.26	32.0	1622747_at	At4g00360	hypothetical protein LOC100254207	-	3e-18	At5g52440	HCF106	O.I.	H.G.	S.X.	Please select
0.24	28.7	1610155_at	At4g00360	hypothetical protein LOC100263834	-	2e-25	At1g16080	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	25.6	1611742_at	At4g00360	hypothetical protein LOC100255949	-	8e-12	At1g15140	oxidoreductase NAD-binding domain-containing protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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