Co-expression analysis

Gene ID	Contig6865_at
Gene name
Homology with Arabidopsis	Similar to At4g00360: CYP86A2 (CYTOCHROME P450 86 A2) (HF=2e-7)
Module size	6 genes
NF	0.37
%ile	50.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.96	Contig6865_at	Contig6865	-	-	2e-7	At4g00360	CYP86A2 (CYTOCHROME P450 86 A2)	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.96	Contig5475_at	Contig5475	-	-	5e+0	At5g05960	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.96	Contig10661_at	Contig10661	-	-	2e+0	At3g15680	zinc finger (Ran-binding) family protein	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.96	Contig11477_at	Contig11477	-	-	8e-5	At1g79040	PSBR (photosystem II subunit R)	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.96	Contig5316_at	Contig5316	-	-	5e-1	At1g11572	-	O.I.	H.G.	S.X.	Please select
0.16	15.3	0.96	Contig17511_at	Contig17511	-	-	8e+0	At5g55750	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.8	99.1	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
9.1	98.9	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.5	98.2	GSM431573	pathogen isolates: Polymyxa betae - rep3	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
5.7	97.7	GSM431570	pathogen isolates: Mock inoculated control - rep3	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
4.9	97.1	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.9	97.1	GSM431548	pathogen isolates: Mock - rep3	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.8	97.0	GSM431568	pathogen isolates: Mock inoculated control - rep1	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
4.8	97.0	GSM431571	pathogen isolates: Polymyxa betae - rep1	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
4.7	96.9	GSM431572	pathogen isolates: Polymyxa betae - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
4.6	96.8	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

A co-expression module including the wheat gene, Ta.254.1.S1_s_at, orthologous to the query gene, Contig6865_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.84	93.6	Ta.254.1.S1_s_at	At4g00360	-	-	2e-2	At1g01600	CYP86A4	O.I.	H.G.	S.X.	Please select
0.76	90.1	AFFX-Tae-r2-Bs-dap-5_at	At4g00360	-	-				O.I.	H.G.	S.X.	Please select
0.60	81.0	Ta.28320.1.S1_s_at	At4g00360	-	-	9e+0	At5g19855	unknown protein	O.I.	H.G.	S.X.	Please select
0.57	79.2	Ta.3199.1.S1_a_at	At4g00360	-	-	5e+0	At5g21940	unknown protein	O.I.	H.G.	S.X.	Please select
0.57	79.2	Ta.6416.1.S1_at	At4g00360	-	-	5e-15	At2g38110	GPAT6 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 6)	O.I.	H.G.	S.X.	Please select
0.48	69.0	Ta.3361.1.S1_x_at	At4g00360	Salt tolerant protein	-	2e+0	At3g49305	-	O.I.	H.G.	S.X.	Please select
0.48	69.0	Ta.3361.1.S1_at	At4g00360	Salt tolerant protein	-	2e+0	At3g49305	-	O.I.	H.G.	S.X.	Please select
0.48	69.0	Ta.1953.2.S1_x_at	At4g00360	-	-	2e-2	At5g07030	aspartic-type endopeptidase	O.I.	H.G.	S.X.	Please select
0.42	60.9	Ta.3361.2.S1_x_at	At4g00360	Salt tolerant protein	-	2e+0	At3g49305	-	O.I.	H.G.	S.X.	Please select
0.39	56.1	Ta.9925.1.A1_x_at	At4g00360	-	-	1e+1	At5g14920	gibberellin-regulated family protein	O.I.	H.G.	S.X.	Please select
0.39	56.1	Ta.3361.3.S1_a_at	At4g00360	salt tolerant protein	-	2e+0	At3g49305	-	O.I.	H.G.	S.X.	Please select
0.39	56.1	TaAffx.71607.1.A1_at	At4g00360	-	-	2e+1	At3g14670	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	56.1	Ta.28328.2.S1_x_at	At4g00360	-	-	2e+1	At5g42850	-	O.I.	H.G.	S.X.	Please select
0.33	46.9	Ta.9925.2.S1_at	At4g00360	-	-	7e-1	At5g42232	-	O.I.	H.G.	S.X.	Please select
0.32	44.4	Ta.20658.1.S1_a_at	At4g00360	-	-	4e-1	At3g06130	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please select
0.27	35.6	Ta.5103.1.S1_at	At4g00360	-	-	1e-3	At4g38680	GRP2 (GLYCINE RICH PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.25	32.1	Ta.29445.1.S1_at	At4g00360	-	-	3e+0	At3g48660	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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