CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig6865_at

Gene name
Homology with Arabidopsis Similar to At4g00360: CYP86A2 (CYTOCHROME P450 86 A2) (HF=2e-7)

Module size 6 genes

NF 0.37

%ile 50.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.1 0.96 Contig6865_at Contig6865 - - 2e-7 At4g00360 CYP86A2 (CYTOCHROME P450 86 A2) O.I. H.G. S.X.
0.60 77.3 0.96 Contig5475_at Contig5475 - - 5e+0 At5g05960 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein O.I. H.G. S.X.
0.36 47.1 0.96 Contig10661_at Contig10661 - - 2e+0 At3g15680 zinc finger (Ran-binding) family protein O.I. H.G. S.X.
0.31 38.6 0.96 Contig11477_at Contig11477 - - 8e-5 At1g79040 PSBR (photosystem II subunit R) O.I. H.G. S.X.
0.31 38.6 0.96 Contig5316_at Contig5316 - - 5e-1 At1g11572 - O.I. H.G. S.X.
0.16 15.3 0.96 Contig17511_at Contig17511 - - 8e+0 At5g55750 hydroxyproline-rich glycoprotein family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.8 99.1 GSM238429 Embryo 16DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
9.1 98.9 GSM238428 Embryo 16DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
6.5 98.2 GSM431573 pathogen isolates: Polymyxa betae - rep3 GSE17240 Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
5.7 97.7 GSM431570 pathogen isolates: Mock inoculated control - rep3 GSE17240 Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
4.9 97.1 GSM261045 after 3 days in mannitol medium rep1 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.9 97.1 GSM431548 pathogen isolates: Mock - rep3 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.8 97.0 GSM431568 pathogen isolates: Mock inoculated control - rep1 GSE17240 Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
4.8 97.0 GSM431571 pathogen isolates: Polymyxa betae - rep1 GSE17240 Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
4.7 96.9 GSM431572 pathogen isolates: Polymyxa betae - rep2 GSE17240 Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
4.6 96.8 GSM238435 Embryo 24 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.211547.1.S1_at, orthologous to the query gene, Contig6865_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.50 78.6 PtpAffx.211547.1.S1_at At4g00360 cytochrome P450 - 5e-42 At4g00360 CYP86A2 (CYTOCHROME P450 86 A2) O.I. H.G. S.X.
0.50 78.6 PtpAffx.22848.1.S1_at At4g00360 cytochrome P450 - 9e-2 At1g64950 CYP89A5 O.I. H.G. S.X.
0.40 67.0 PtpAffx.7311.3.A1_at At4g00360 hypothetical protein - 2e+0 At5g23940 EMB3009 (embryo defective 3009) O.I. H.G. S.X.
0.29 50.5 PtpAffx.214575.1.S1_at At4g00360 AP2/ERF domain-containing transcription factor - 5e-9 At1g15360 SHN1 (SHINE 1) O.I. H.G. S.X.
0.27 47.1 PtpAffx.205264.1.S1_at At4g00360 GRAS family transcription factor - 2e+0 At5g16950 unknown protein O.I. H.G. S.X.
0.16 26.9 PtpAffx.12439.3.A1_a_at At4g00360 hypothetical protein - 2e-8 At2g28950 ATEXPA6 (ARABIDOPSIS THALIANA EXPANSIN A6) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage