Co-expression analysis

Gene ID Contig6865_at
Gene name
Homology with ArabidopsisSimilar to At4g00360: CYP86A2 (CYTOCHROME P450 86 A2) (HF=2e-7)
Module size 6 genes
NF 0.37
%ile 50.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.96Contig6865_atContig6865--2e-7At4g00360CYP86A2 (CYTOCHROME P450 86 A2)O.I.H.G.S.X.
0.6077.30.96Contig5475_atContig5475--5e+0At5g05960protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.H.G.S.X.
0.3647.10.96Contig10661_atContig10661--2e+0At3g15680zinc finger (Ran-binding) family proteinO.I.H.G.S.X.
0.3138.60.96Contig11477_atContig11477--8e-5At1g79040PSBR (photosystem II subunit R)O.I.H.G.S.X.
0.3138.60.96Contig5316_atContig5316--5e-1At1g11572-O.I.H.G.S.X.
0.1615.30.96Contig17511_atContig17511--8e+0At5g55750hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.899.1GSM238429Embryo 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
9.198.9GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.598.2GSM431573pathogen isolates: Polymyxa betae - rep3GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betaeLink to GEO
5.797.7GSM431570pathogen isolates: Mock inoculated control - rep3GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betaeLink to GEO
4.997.1GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
4.997.1GSM431548pathogen isolates: Mock - rep3GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
4.897.0GSM431568pathogen isolates: Mock inoculated control - rep1GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betaeLink to GEO
4.897.0GSM431571pathogen isolates: Polymyxa betae - rep1GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betaeLink to GEO
4.796.9GSM431572pathogen isolates: Polymyxa betae - rep2GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betaeLink to GEO
4.696.8GSM238435Embryo 24 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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