Co-expression analysis

Gene ID Contig6860_at
Gene name
Homology with ArabidopsisSimilar to At5g66815: unknown protein (HF=8e-4)
Module size 6 genes
NF 0.65
%ile 87.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6784.70.96Contig6860_atContig6860--8e-4At5g66815unknown proteinO.I.H.G.S.X.
0.7388.70.96Contig16423_atContig16423--2e+0At3g02580STE1 (STEROL 1)O.I.H.G.S.X.
0.7187.10.96Contig3332_atContig3332--2e-1At3g21215RNA-binding protein, putativeO.I.H.G.S.X.
0.5975.80.96rbaak4i15_s_atrbaak4i15--2e-6At5g08680ATP synthase beta chain, mitochondrial, putativeO.I.H.G.S.X.
0.5572.00.96HA06i14r_s_atHA06i14r--8e-4At5g15650RGP2 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 2)O.I.H.G.S.X.
0.4863.20.96Contig416_x_atContig416--5e-29At4g24190SHD (SHEPHERD)O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8694.80.95Contig3335_atContig3335--3e-67At5g59840Ras-related GTP-binding family proteinO.I.H.G.S.X.
0.8092.50.95Contig3334_atContig3334--2e-53At3g53610ATRAB8O.I.H.G.S.X.
0.8092.50.95Contig3337_atContig3337--5e-50At5g59840Ras-related GTP-binding family proteinO.I.H.G.S.X.
0.6784.70.95Contig11576_atContig11576--4e-1At3g58150-O.I.H.G.S.X.
0.6380.30.95Contig4507_atContig4507--6e+0At1g61760harpin-induced protein-related / HIN1-related / harpin-responsive protein-relatedO.I.H.G.S.X.
0.5774.90.95Contig8563_atContig8563--3e-2At3g04990-O.I.H.G.S.X.
0.5674.30.95Contig4537_atContig4537--3e-36At5g13120peptidyl-prolyl cis-trans isomerase cyclophilin-type family proteinO.I.H.G.S.X.
0.5066.90.92Contig7722_atContig7722--4e-5At5g44210ERF9 (ERF DOMAIN PROTEIN 9)O.I.H.G.S.X.
0.5066.90.95Contig18104_atContig18104--2e-2At1g63057unknown proteinO.I.H.G.S.X.
0.5066.90.95Contig3111_atContig3111--5e-1At5g64667IDL2 (INFLORESCENCE DEFICIENT IN ABSCISSION (IDA)-LIKE 2)O.I.H.G.S.X.
0.4762.20.93Contig3302_atContig3302--3e-1At2g01100unknown proteinO.I.H.G.S.X.
0.4762.20.94Contig5046_atContig5046--3e-6At3g45280SYP72 (SYNTAXIN OF PLANTS 72)O.I.H.G.S.X.
0.4458.90.93Contig19802_atContig19802--3e+0At5g59300UBC7 (UBIQUITIN CARRIER PROTEIN 7)O.I.H.G.S.X.
0.4458.90.95Contig22852_atContig22852--6e-1At5g24250unknown proteinO.I.H.G.S.X.
0.4458.90.95Contig26506_atContig26506--7e-2At1g75720unknown proteinO.I.H.G.S.X.
0.4356.40.93Contig5658_atContig5658--2e-1At1g23740oxidoreductase, zinc-binding dehydrogenase family proteinO.I.H.G.S.X.
0.4356.40.95rbags1b15_x_atrbags1b15--2e-7At3g09820ADK1 (adenosine kinase 1)O.I.H.G.S.X.
0.4255.20.95Contig5749_atContig5749--6e-16At2g25310carbohydrate bindingO.I.H.G.S.X.
0.4053.10.92Contig13579_atContig13579--2e+0At1g12020unknown proteinO.I.H.G.S.X.
0.4053.10.94Contig16272_atContig16272--2e+0At3g22030receptor-like protein kinase-relatedO.I.H.G.S.X.
0.4053.10.94Contig14248_atContig14248--2e+0At4g03060AOP2 (ALKENYL HYDROXALKYL PRODUCING 2)O.I.H.G.S.X.
0.4053.10.95Contig18108_atContig18108--2e+0At5g05990mitochondrial glycoprotein family protein / MAM33 family proteinO.I.H.G.S.X.
0.4053.10.96Contig12140_atContig12140--4e+0At5g54440unknown proteinO.I.H.G.S.X.
0.4053.10.96Contig8975_atContig8975--2e-23At4g36080FAT domain-containing protein / phosphatidylinositol 3- and 4-kinase family proteinO.I.H.G.S.X.
0.3849.50.96Contig7333_atContig7333--6e-2At3g54360protein binding / zinc ion bindingO.I.H.G.S.X.
0.3647.10.94Contig3233_atContig3233--2e+0At1g12810proline-rich family proteinO.I.H.G.S.X.
0.3647.10.95Contig13281_atContig13281--7e-1At5g5265040S ribosomal protein S10 (RPS10C)O.I.H.G.S.X.
0.3647.10.96Contig7217_x_atContig7217--4e-1Atcg01020-O.I.H.G.S.X.
0.3647.10.96Contig6890_atContig6890--4e+0At5g34581hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.3647.10.96Contig14154_atContig14154--2e+0At1g60320Toll-Interleukin-Resistance (TIR) domain-containing proteinO.I.H.G.S.X.
0.3545.10.92Contig10039_atContig10039--8e-4At3g46930protein kinase family proteinO.I.H.G.S.X.
0.3342.60.93S0001100150B08F1_s_atS0001100150B08F1--1e+1At5g43680unknown proteinO.I.H.G.S.X.
0.3342.60.93EBro08_SQ003_F16_atEBro08_SQ003_F16--6e-1At3g48800sterile alpha motif (SAM) domain-containing proteinO.I.H.G.S.X.
0.3342.60.93Contig6892_s_atContig6892--1e+0At5g19810proline-rich extensin-like family proteinO.I.H.G.S.X.
0.3342.60.95Contig20472_atContig20472--1e+0At2g35460harpin-induced family protein / HIN1 family protein / harpin-responsive family proteinO.I.H.G.S.X.
0.3342.60.95HS08H05u_atHS08H05u--2e-4At5g60460sec61beta family proteinO.I.H.G.S.X.
0.3342.60.96Contig10954_atContig10954--4e+0At3g21175ZML1 (ZIM-LIKE 1)O.I.H.G.S.X.
0.3240.30.95Contig6132_atContig6132--9e-8At4g35300TMT2 (TONOPLAST MONOSACCHARIDE TRANSPORTER2)O.I.H.G.S.X.
0.3240.30.95Contig26297_atContig26297--4e+0At5g38630ACYB-1O.I.H.G.S.X.
0.3138.60.94HU08O22r_atHU08O22r--7e-5At1g31910GHMP kinase family proteinO.I.H.G.S.X.
0.3138.60.96Contig4763_atContig4763--3e-7At4g39960DNAJ heat shock family proteinO.I.H.G.S.X.
0.3037.00.93Contig5401_s_atContig5401--1e-39At1g03475LIN2 (LESION INITIATION 2)O.I.H.G.S.X.
0.3037.00.95Contig1302_atContig1302--1e-5At1g20580small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putativeO.I.H.G.S.X.
0.2935.50.94Contig4672_atContig4672--4e-71At5g10840endomembrane protein 70, putativeO.I.H.G.S.X.
0.2935.50.94Contig381_x_atContig381--2e-2At5g25940early nodulin-relatedO.I.H.G.S.X.
0.2935.50.92Contig9730_atContig9730--2e-3At5g57120-O.I.H.G.S.X.
0.2935.50.93Contig23073_atContig23073--2e-1At2g04622unknown proteinO.I.H.G.S.X.
0.2935.50.94Contig21877_s_atContig21877--3e+0At1g33940-O.I.H.G.S.X.
0.2935.50.94Contig5612_s_atContig5612--3e-3At3g47350short-chain dehydrogenase/reductase (SDR) family proteinO.I.H.G.S.X.
0.2935.50.94Contig7285_atContig7285--2e-4At5g17670hydrolase, acting on ester bondsO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.298.5GSM282031Malting_day1_Harrington_rep1GSE11200Expression data from malting barley seedsLink to GEO
5.397.4GSM382232Root_Hg1GSE15295Mercury toxicity in barley rootsLink to GEO
5.297.4GSM382234Root_Hg3GSE15295Mercury toxicity in barley rootsLink to GEO
5.197.3GSM238430Embryo 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.897.0GSM238431Embryo 25DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.796.9GSM382233Root_Hg2GSE15295Mercury toxicity in barley rootsLink to GEO
4.696.8GSM382237Root_Control3GSE15295Mercury toxicity in barley rootsLink to GEO
4.296.3GSM238432Embryo 0 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.995.8GSM382236Root_Control2GSE15295Mercury toxicity in barley rootsLink to GEO
3.895.7GSM382235Root_Control1GSE15295Mercury toxicity in barley rootsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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