CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig6860_at

Gene name
Homology with Arabidopsis Similar to At5g66815: unknown protein (HF=8e-4)

Module size 6 genes

NF 0.65

%ile 87.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 84.7 0.96 Contig6860_at Contig6860 - - 8e-4 At5g66815 unknown protein O.I. H.G. S.X.
0.73 88.7 0.96 Contig16423_at Contig16423 - - 2e+0 At3g02580 STE1 (STEROL 1) O.I. H.G. S.X.
0.71 87.1 0.96 Contig3332_at Contig3332 - - 2e-1 At3g21215 RNA-binding protein, putative O.I. H.G. S.X.
0.59 75.8 0.96 rbaak4i15_s_at rbaak4i15 - - 2e-6 At5g08680 ATP synthase beta chain, mitochondrial, putative O.I. H.G. S.X.
0.55 72.0 0.96 HA06i14r_s_at HA06i14r - - 8e-4 At5g15650 RGP2 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 2) O.I. H.G. S.X.
0.48 63.2 0.96 Contig416_x_at Contig416 - - 5e-29 At4g24190 SHD (SHEPHERD) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.67	84.7	0.96	Contig6860_at	Contig6860	-	-	8e-4	At5g66815	unknown protein	O.I.	H.G.	S.X.
0.73	88.7	0.96	Contig16423_at	Contig16423	-	-	2e+0	At3g02580	STE1 (STEROL 1)	O.I.	H.G.	S.X.
0.71	87.1	0.96	Contig3332_at	Contig3332	-	-	2e-1	At3g21215	RNA-binding protein, putative	O.I.	H.G.	S.X.
0.59	75.8	0.96	rbaak4i15_s_at	rbaak4i15	-	-	2e-6	At5g08680	ATP synthase beta chain, mitochondrial, putative	O.I.	H.G.	S.X.
0.55	72.0	0.96	HA06i14r_s_at	HA06i14r	-	-	8e-4	At5g15650	RGP2 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 2)	O.I.	H.G.	S.X.
0.48	63.2	0.96	Contig416_x_at	Contig416	-	-	5e-29	At4g24190	SHD (SHEPHERD)	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.2 98.5 GSM282031 Malting_day1_Harrington_rep1 GSE11200 Expression data from malting barley seeds
5.3 97.4 GSM382232 Root_Hg1 GSE15295 Mercury toxicity in barley roots
5.2 97.4 GSM382234 Root_Hg3 GSE15295 Mercury toxicity in barley roots
5.1 97.3 GSM238430 Embryo 25DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
4.8 97.0 GSM238431 Embryo 25DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
4.7 96.9 GSM382233 Root_Hg2 GSE15295 Mercury toxicity in barley roots
4.6 96.8 GSM382237 Root_Control3 GSE15295 Mercury toxicity in barley roots
4.2 96.3 GSM238432 Embryo 0 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
3.9 95.8 GSM382236 Root_Control2 GSE15295 Mercury toxicity in barley roots
3.8 95.7 GSM382235 Root_Control1 GSE15295 Mercury toxicity in barley roots

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
7.2	98.5	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
5.3	97.4	GSM382232	Root_Hg1	GSE15295	Mercury toxicity in barley roots
5.2	97.4	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
5.1	97.3	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.8	97.0	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.7	96.9	GSM382233	Root_Hg2	GSE15295	Mercury toxicity in barley roots
4.6	96.8	GSM382237	Root_Control3	GSE15295	Mercury toxicity in barley roots
4.2	96.3	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.9	95.8	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots
3.8	95.7	GSM382235	Root_Control1	GSE15295	Mercury toxicity in barley roots

Inter-species module comparison

A co-expression module including the grape gene, 1621864_at, orthologous to the query gene, Contig6860_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.97 99.9 1621864_at At5g66815 - - 1e-6 At4g29430 rps15ae (ribosomal protein S15A E) O.I. H.G. S.X.
0.60 81.9 1619124_at At5g66815 - - 1e+0 At1g08220 - O.I. H.G. S.X.
0.57 79.8 1613848_at At5g66815 - - 4e-9 At3g55520 immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative O.I. H.G. S.X.
0.47 67.7 1611427_x_at At5g66815 - - 7e+0 At5g64810 WRKY51 O.I. H.G. S.X.
0.42 60.1 1617458_at At5g66815 - - 7e+0 At5g64810 WRKY51 O.I. H.G. S.X.
0.35 48.5 1622240_x_at At5g66815 - - 7e+0 At5g37580 - O.I. H.G. S.X.
0.33 45.7 1622815_at At5g66815 - - 1e+0 At1g68935 unknown protein O.I. H.G. S.X.
0.33 45.7 1612421_at At5g66815 hypothetical protein LOC100262002 - 4e+0 At5g13080 WRKY75 O.I. H.G. S.X.
0.32 43.1 1608846_at At5g66815 - - 3e-9 At2g40800 - O.I. H.G. S.X.
0.30 39.4 1614199_at At5g66815 - - 2e+1 At5g44572 unknown protein O.I. H.G. S.X.
0.30 39.4 1618109_at At5g66815 - - 2e-11 At3g54170 ATFIP37 (ARABIDOPSIS THALIANA FKBP12 INTERACTING PROTEIN 37) O.I. H.G. S.X.
0.29 37.7 1612087_at At5g66815 - - 2e+0 At2g28140 unknown protein O.I. H.G. S.X.
0.29 37.7 1619679_at At5g66815 - - 1e+0 At3g15690 biotin carboxyl carrier protein of acetyl-CoA carboxylase-related O.I. H.G. S.X.
0.27 34.0 1619663_at At5g66815 hypothetical protein LOC100243552 - 4e+0 At4g10920 KELP O.I. H.G. S.X.
0.25 30.5 1620148_at At5g66815 hypothetical protein LOC100252338 - 3e-17 At3g58830 haloacid dehalogenase (HAD) superfamily protein O.I. H.G. S.X.
0.25 30.5 1612545_at At5g66815 - - 1e+1 At5g08190 NF-YB12 (NUCLEAR FACTOR Y, SUBUNIT B12) O.I. H.G. S.X.
0.24 28.7 1607490_at At5g66815 hypothetical protein LOC100258031 - 1e-5 At1g08340 rac GTPase activating protein, putative O.I. H.G. S.X.
0.24 28.7 1618609_s_at At5g66815 hypothetical protein LOC100249094 - 1e+0 At4g28556 RIC7 O.I. H.G. S.X.
0.22 25.6 1616315_s_at At5g66815 hypothetical protein LOC100254003 - 3e-16 At1g20330 SMT2 (STEROL METHYLTRANSFERASE 2) O.I. H.G. S.X.
0.22 25.6 1611574_at At5g66815 hypothetical protein LOC100243229 - 1e-23 At4g30620 unknown protein O.I. H.G. S.X.
0.22 25.6 1618539_at At5g66815 hypothetical protein LOC100267633 - 1e-2 At2g41950 unknown protein O.I. H.G. S.X.
0.22 25.6 1612900_at At5g66815 hypothetical protein LOC100259949 - 5e+0 At5g44585 unknown protein O.I. H.G. S.X.
0.22 25.6 1608405_at At5g66815 hypothetical protein LOC100243295 - 4e+0 At5g34881 unknown protein O.I. H.G. S.X.
0.21 24.0 1615501_at At5g66815 - - 4e+0 At3g11660 NHL1 O.I. H.G. S.X.
0.21 24.0 1612604_at At5g66815 - - 6e-2 At5g42635 glycine-rich protein O.I. H.G. S.X.
0.20 22.4 1610395_s_at At5g66815 hypothetical protein LOC100267880 - 2e-77 At3g01120 MTO1 (METHIONINE OVERACCUMULATION 1) O.I. H.G. S.X.
0.18 19.4 1611218_at At5g66815 hypothetical LOC100261590 - 3e-1 At1g66360 C2 domain-containing protein O.I. H.G. S.X.
0.16 16.7 1621053_at At5g66815 hypothetical protein LOC100258640 - 1e-9 At1g66430 pfkB-type carbohydrate kinase family protein O.I. H.G. S.X.
0.14 14.4 1617258_at At5g66815 hypothetical protein LOC100245053 - 4e+0 At5g23060 CaS (Calcium sensing receptor) O.I. H.G. S.X.
0.13 13.3 1616367_x_at At5g66815 - - 4e-10 At5g13030 unknown protein O.I. H.G. S.X.
0.10 10.3 1609245_at At5g66815 hypothetical protein LOC100249819 - 1e-6 At4g29430 rps15ae (ribosomal protein S15A E) O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.97	99.9	1621864_at	At5g66815	-	-	1e-6	At4g29430	rps15ae (ribosomal protein S15A E)	O.I.	H.G.	S.X.
0.60	81.9	1619124_at	At5g66815	-	-	1e+0	At1g08220	-	O.I.	H.G.	S.X.
0.57	79.8	1613848_at	At5g66815	-	-	4e-9	At3g55520	immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative	O.I.	H.G.	S.X.
0.47	67.7	1611427_x_at	At5g66815	-	-	7e+0	At5g64810	WRKY51	O.I.	H.G.	S.X.
0.42	60.1	1617458_at	At5g66815	-	-	7e+0	At5g64810	WRKY51	O.I.	H.G.	S.X.
0.35	48.5	1622240_x_at	At5g66815	-	-	7e+0	At5g37580	-	O.I.	H.G.	S.X.
0.33	45.7	1622815_at	At5g66815	-	-	1e+0	At1g68935	unknown protein	O.I.	H.G.	S.X.
0.33	45.7	1612421_at	At5g66815	hypothetical protein LOC100262002	-	4e+0	At5g13080	WRKY75	O.I.	H.G.	S.X.
0.32	43.1	1608846_at	At5g66815	-	-	3e-9	At2g40800	-	O.I.	H.G.	S.X.
0.30	39.4	1614199_at	At5g66815	-	-	2e+1	At5g44572	unknown protein	O.I.	H.G.	S.X.
0.30	39.4	1618109_at	At5g66815	-	-	2e-11	At3g54170	ATFIP37 (ARABIDOPSIS THALIANA FKBP12 INTERACTING PROTEIN 37)	O.I.	H.G.	S.X.
0.29	37.7	1612087_at	At5g66815	-	-	2e+0	At2g28140	unknown protein	O.I.	H.G.	S.X.
0.29	37.7	1619679_at	At5g66815	-	-	1e+0	At3g15690	biotin carboxyl carrier protein of acetyl-CoA carboxylase-related	O.I.	H.G.	S.X.
0.27	34.0	1619663_at	At5g66815	hypothetical protein LOC100243552	-	4e+0	At4g10920	KELP	O.I.	H.G.	S.X.
0.25	30.5	1620148_at	At5g66815	hypothetical protein LOC100252338	-	3e-17	At3g58830	haloacid dehalogenase (HAD) superfamily protein	O.I.	H.G.	S.X.
0.25	30.5	1612545_at	At5g66815	-	-	1e+1	At5g08190	NF-YB12 (NUCLEAR FACTOR Y, SUBUNIT B12)	O.I.	H.G.	S.X.
0.24	28.7	1607490_at	At5g66815	hypothetical protein LOC100258031	-	1e-5	At1g08340	rac GTPase activating protein, putative	O.I.	H.G.	S.X.
0.24	28.7	1618609_s_at	At5g66815	hypothetical protein LOC100249094	-	1e+0	At4g28556	RIC7	O.I.	H.G.	S.X.
0.22	25.6	1616315_s_at	At5g66815	hypothetical protein LOC100254003	-	3e-16	At1g20330	SMT2 (STEROL METHYLTRANSFERASE 2)	O.I.	H.G.	S.X.
0.22	25.6	1611574_at	At5g66815	hypothetical protein LOC100243229	-	1e-23	At4g30620	unknown protein	O.I.	H.G.	S.X.
0.22	25.6	1618539_at	At5g66815	hypothetical protein LOC100267633	-	1e-2	At2g41950	unknown protein	O.I.	H.G.	S.X.
0.22	25.6	1612900_at	At5g66815	hypothetical protein LOC100259949	-	5e+0	At5g44585	unknown protein	O.I.	H.G.	S.X.
0.22	25.6	1608405_at	At5g66815	hypothetical protein LOC100243295	-	4e+0	At5g34881	unknown protein	O.I.	H.G.	S.X.
0.21	24.0	1615501_at	At5g66815	-	-	4e+0	At3g11660	NHL1	O.I.	H.G.	S.X.
0.21	24.0	1612604_at	At5g66815	-	-	6e-2	At5g42635	glycine-rich protein	O.I.	H.G.	S.X.
0.20	22.4	1610395_s_at	At5g66815	hypothetical protein LOC100267880	-	2e-77	At3g01120	MTO1 (METHIONINE OVERACCUMULATION 1)	O.I.	H.G.	S.X.
0.18	19.4	1611218_at	At5g66815	hypothetical LOC100261590	-	3e-1	At1g66360	C2 domain-containing protein	O.I.	H.G.	S.X.
0.16	16.7	1621053_at	At5g66815	hypothetical protein LOC100258640	-	1e-9	At1g66430	pfkB-type carbohydrate kinase family protein	O.I.	H.G.	S.X.
0.14	14.4	1617258_at	At5g66815	hypothetical protein LOC100245053	-	4e+0	At5g23060	CaS (Calcium sensing receptor)	O.I.	H.G.	S.X.
0.13	13.3	1616367_x_at	At5g66815	-	-	4e-10	At5g13030	unknown protein	O.I.	H.G.	S.X.
0.10	10.3	1609245_at	At5g66815	hypothetical protein LOC100249819	-	1e-6	At4g29430	rps15ae (ribosomal protein S15A E)	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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Gene ID	Contig6860_at
Gene name
Homology with Arabidopsis	Similar to At5g66815: unknown protein (HF=8e-4)
Module size	6 genes
NF	0.65
%ile	87.2

Co-expression analysis

Gene ID Contig6860_at Gene name Homology with ArabidopsisSimilar to At5g66815: unknown protein (HF=8e-4) Module size 6 genes NF 0.65 %ile 87.2

Co-expressed genes

Click More genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxOryza_sativaPopulus_trichocarpaTriticum_aestivumZea_mays

Gene ID Contig6860_at

Gene name
Homology with Arabidopsis Similar to At5g66815: unknown protein (HF=8e-4)

Module size 6 genes

NF 0.65

%ile 87.2

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays