Co-expression analysis

Gene ID Contig6860_at
Gene name
Homology with ArabidopsisSimilar to At5g66815: unknown protein (HF=8e-4)
Module size 6 genes
NF 0.65
%ile 87.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6784.70.96Contig6860_atContig6860--8e-4At5g66815unknown proteinO.I.H.G.S.X.
0.7388.70.96Contig16423_atContig16423--2e+0At3g02580STE1 (STEROL 1)O.I.H.G.S.X.
0.7187.10.96Contig3332_atContig3332--2e-1At3g21215RNA-binding protein, putativeO.I.H.G.S.X.
0.5975.80.96rbaak4i15_s_atrbaak4i15--2e-6At5g08680ATP synthase beta chain, mitochondrial, putativeO.I.H.G.S.X.
0.5572.00.96HA06i14r_s_atHA06i14r--8e-4At5g15650RGP2 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 2)O.I.H.G.S.X.
0.4863.20.96Contig416_x_atContig416--5e-29At4g24190SHD (SHEPHERD)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.298.5GSM282031Malting_day1_Harrington_rep1GSE11200Expression data from malting barley seedsLink to GEO
5.397.4GSM382232Root_Hg1GSE15295Mercury toxicity in barley rootsLink to GEO
5.297.4GSM382234Root_Hg3GSE15295Mercury toxicity in barley rootsLink to GEO
5.197.3GSM238430Embryo 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.897.0GSM238431Embryo 25DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.796.9GSM382233Root_Hg2GSE15295Mercury toxicity in barley rootsLink to GEO
4.696.8GSM382237Root_Control3GSE15295Mercury toxicity in barley rootsLink to GEO
4.296.3GSM238432Embryo 0 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.995.8GSM382236Root_Control2GSE15295Mercury toxicity in barley rootsLink to GEO
3.895.7GSM382235Root_Control1GSE15295Mercury toxicity in barley rootsLink to GEO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.213281.1.S1_at, orthologous to the query gene, Contig6860_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7895.1PtpAffx.213281.1.S1_atAt5g66815hypothetical protein-1e-1At5g66815unknown proteinO.I.H.G.S.X.
0.3458.3PtpAffx.75999.1.A1_atAt5g66815--6e+0At5g55970zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.2950.5PtpAffx.209579.1.S1_atAt5g66815hypothetical protein-2e-1At3g52150RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.2645.2PtpAffx.223995.1.S1_atAt5g66815hypothetical protein-9e-7At5g27270EMB976 (EMBRYO DEFECTIVE 976)O.I.H.G.S.X.
0.2441.8PtpAffx.18522.1.A1_atAt5g66815--2e-1At2g2771060S acidic ribosomal protein P2 (RPP2B)O.I.H.G.S.X.
0.2238.3PtpAffx.804.1.A1_atAt5g66815--2e-1At4g2589060S acidic ribosomal protein P3 (RPP3A)O.I.H.G.S.X.
0.2136.5PtpAffx.205991.1.S1_atAt5g66815hypothetical protein-4e-8At1g32583-O.I.H.G.S.X.
0.2136.5PtpAffx.200282.1.S1_atAt5g66815hypothetical protein-6e-1At2g25840OVA4 (ovule abortion 4)O.I.H.G.S.X.
0.2136.5PtpAffx.218062.1.S1_s_atAt5g66815hypothetical protein-7e-1At2g34420LHB1B2O.I.H.G.S.X.
0.2034.6PtpAffx.108662.1.A1_atAt5g66815--7e-1At5g15760plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putativeO.I.H.G.S.X.
0.1626.9PtpAffx.207818.1.S1_atAt5g66815hypothetical protein-3e-5At3g12685-O.I.H.G.S.X.
0.1626.9PtpAffx.208065.1.S1_atAt5g66815hypothetical protein-7e-2At5g46360KCO3 (CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 3)O.I.H.G.S.X.
0.1525.3PtpAffx.219942.1.S1_atAt5g66815hypothetical protein-1e+0At5g04270zinc ion bindingO.I.H.G.S.X.
0.1525.3PtpAffx.20445.2.A1_atAt5g66815magnesium transporter /// magnesium transporter-1e-25At1g16010magnesium transporter CorA-like family protein (MRS2-1)O.I.H.G.S.X.
0.1423.5PtpAffx.24090.1.A1_atAt5g66815--1e+0At2g25270unknown proteinO.I.H.G.S.X.
0.1321.6PtpAffx.216120.1.S1_s_atAt5g66815hypothetical protein-3e-3At1g02640BXL2 (BETA-XYLOSIDASE 2)O.I.H.G.S.X.
0.1321.6PtpAffx.201569.1.S1_atAt5g66815hypothetical protein-8e-7At1g07380ceramidase family proteinO.I.H.G.S.X.
0.1321.6PtpAffx.32997.1.A1_atAt5g66815hypothetical protein-3e+0At5g57300UbiE/COQ5 methyltransferase family proteinO.I.H.G.S.X.
0.1219.6PtpAffx.213427.1.S1_atAt5g66815hypothetical protein-2e-38At2g0522040S ribosomal protein S17 (RPS17B)O.I.H.G.S.X.
0.1118.1PtpAffx.5179.2.A1_atAt5g66815hypothetical protein-1e-10At3g58670unknown proteinO.I.H.G.S.X.
0.1118.1PtpAffx.7042.1.S1_atAt5g66815--2e+0At5g40382cytochrome-c oxidaseO.I.H.G.S.X.
0.1016.3PtpAffx.221050.1.S1_x_atAt5g66815--1e-1At4g27590copper-binding protein-relatedO.I.H.G.S.X.
0.1016.3PtpAffx.205732.1.S1_atAt5g66815hypothetical protein-5e-78Atmg00580-O.I.H.G.S.X.
0.1016.3PtpAffx.210203.1.S1_atAt5g66815hypothetical protein-3e-2At1g64080unknown proteinO.I.H.G.S.X.
0.0914.6PtpAffx.214463.1.S1_atAt5g66815--2e+0At1g20590cyclin, putativeO.I.H.G.S.X.
0.0711.6PtpAffx.145046.1.A1_atAt5g66815hypothetical protein-4e+0At4g35025unknown proteinO.I.H.G.S.X.
0.0711.6PtpAffx.151542.1.A1_atAt5g66815hypothetical protein-2e-7At2g28150unknown proteinO.I.H.G.S.X.
0.058.3PtpAffx.148161.1.S1_atAt5g66815--3e+0At5g59060unknown proteinO.I.H.G.S.X.
0.046.9PtpAffx.123170.1.S1_atAt5g66815hypothetical protein-8e-31At5g63470NF-YC4 (NUCLEAR FACTOR Y, SUBUNIT C4)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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