Co-expression analysis

Gene ID	Contig6860_at
Gene name
Homology with Arabidopsis	Similar to At5g66815: unknown protein (HF=8e-4)
Module size	6 genes
NF	0.65
%ile	87.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	84.7	0.96	Contig6860_at	Contig6860	-	-	8e-4	At5g66815	unknown protein	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.96	Contig16423_at	Contig16423	-	-	2e+0	At3g02580	STE1 (STEROL 1)	O.I.	H.G.	S.X.	Please select
0.71	87.1	0.96	Contig3332_at	Contig3332	-	-	2e-1	At3g21215	RNA-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.59	75.8	0.96	rbaak4i15_s_at	rbaak4i15	-	-	2e-6	At5g08680	ATP synthase beta chain, mitochondrial, putative	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.96	HA06i14r_s_at	HA06i14r	-	-	8e-4	At5g15650	RGP2 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 2)	O.I.	H.G.	S.X.	Please select
0.48	63.2	0.96	Contig416_x_at	Contig416	-	-	5e-29	At4g24190	SHD (SHEPHERD)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.2	98.5	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
5.3	97.4	GSM382232	Root_Hg1	GSE15295	Mercury toxicity in barley roots
5.2	97.4	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
5.1	97.3	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.8	97.0	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.7	96.9	GSM382233	Root_Hg2	GSE15295	Mercury toxicity in barley roots
4.6	96.8	GSM382237	Root_Control3	GSE15295	Mercury toxicity in barley roots
4.2	96.3	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.9	95.8	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots
3.8	95.7	GSM382235	Root_Control1	GSE15295	Mercury toxicity in barley roots

Inter-species module comparison

A co-expression module including the rice gene, Os06g0232000, orthologous to the query gene, Contig6860_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	68.0	Os06g0232000	At5g66815	-	Hypothetical protein	2e-4	At5g39570	unknown protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.55	73.7	Os05g0455600	At5g66815	-	Prenylated rab acceptor PRA1 family protein	1e-2	At5g02040	PRA1.A1 (PRENYLATED RAB ACCEPTOR 1.A1)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.42	53.9	Os01g0857700	At5g66815	-	Cell cycle control protein cwf14	2e-19	At4g21110	G10 family protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.40	51.1	Os01g0141100	At5g66815	-	ATPase of the AAA+ class	4e-52	At2g27600	SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.24	22.4	Os01g0254900	At5g66815	-	Syntaxin	1e-5	At5g46860	VAM3	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.24	22.4	Os04g0464500	At5g66815	-	UBX domain containing protein	7e-4	At4g22150	PUX3	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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