Co-expression analysis

Gene ID Contig6860_at
Gene name
Homology with ArabidopsisSimilar to At5g66815: unknown protein (HF=8e-4)
Module size 6 genes
NF 0.65
%ile 87.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6784.70.96Contig6860_atContig6860--8e-4At5g66815unknown proteinO.I.H.G.S.X.
0.7388.70.96Contig16423_atContig16423--2e+0At3g02580STE1 (STEROL 1)O.I.H.G.S.X.
0.7187.10.96Contig3332_atContig3332--2e-1At3g21215RNA-binding protein, putativeO.I.H.G.S.X.
0.5975.80.96rbaak4i15_s_atrbaak4i15--2e-6At5g08680ATP synthase beta chain, mitochondrial, putativeO.I.H.G.S.X.
0.5572.00.96HA06i14r_s_atHA06i14r--8e-4At5g15650RGP2 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 2)O.I.H.G.S.X.
0.4863.20.96Contig416_x_atContig416--5e-29At4g24190SHD (SHEPHERD)O.I.H.G.S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.298.5GSM282031Malting_day1_Harrington_rep1GSE11200Expression data from malting barley seedsLink to GEO
5.397.4GSM382232Root_Hg1GSE15295Mercury toxicity in barley rootsLink to GEO
5.297.4GSM382234Root_Hg3GSE15295Mercury toxicity in barley rootsLink to GEO
5.197.3GSM238430Embryo 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.897.0GSM238431Embryo 25DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.796.9GSM382233Root_Hg2GSE15295Mercury toxicity in barley rootsLink to GEO
4.696.8GSM382237Root_Control3GSE15295Mercury toxicity in barley rootsLink to GEO
4.296.3GSM238432Embryo 0 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.995.8GSM382236Root_Control2GSE15295Mercury toxicity in barley rootsLink to GEO
3.895.7GSM382235Root_Control1GSE15295Mercury toxicity in barley rootsLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os06g0232000, orthologous to the query gene, Contig6860_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5068.0Os06g0232000At5g66815-Hypothetical protein2e-4At5g39570unknown proteinO.I.H.G.S.X.
0.5573.7Os05g0455600At5g66815-Prenylated rab acceptor PRA1 family protein1e-2At5g02040PRA1.A1 (PRENYLATED RAB ACCEPTOR 1.A1)O.I.H.G.S.X.
0.4253.9Os01g0857700At5g66815-Cell cycle control protein cwf142e-19At4g21110G10 family proteinO.I.H.G.S.X.
0.4051.1Os01g0141100At5g66815-ATPase of the AAA+ class4e-52At2g27600SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1)O.I.H.G.S.X.
0.2422.4Os04g0464500At5g66815-UBX domain containing protein7e-4At4g22150PUX3O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.

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