Co-expression analysis

Gene ID	Contig6860_at
Gene name
Homology with Arabidopsis	Similar to At5g66815: unknown protein (HF=8e-4)
Module size	6 genes
NF	0.65
%ile	87.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	84.7	0.96	Contig6860_at	Contig6860	-	-	8e-4	At5g66815	unknown protein	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.96	Contig16423_at	Contig16423	-	-	2e+0	At3g02580	STE1 (STEROL 1)	O.I.	H.G.	S.X.	Please select
0.71	87.1	0.96	Contig3332_at	Contig3332	-	-	2e-1	At3g21215	RNA-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.59	75.8	0.96	rbaak4i15_s_at	rbaak4i15	-	-	2e-6	At5g08680	ATP synthase beta chain, mitochondrial, putative	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.96	HA06i14r_s_at	HA06i14r	-	-	8e-4	At5g15650	RGP2 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 2)	O.I.	H.G.	S.X.	Please select
0.48	63.2	0.96	Contig416_x_at	Contig416	-	-	5e-29	At4g24190	SHD (SHEPHERD)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.2	98.5	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
5.3	97.4	GSM382232	Root_Hg1	GSE15295	Mercury toxicity in barley roots
5.2	97.4	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
5.1	97.3	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.8	97.0	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.7	96.9	GSM382233	Root_Hg2	GSE15295	Mercury toxicity in barley roots
4.6	96.8	GSM382237	Root_Control3	GSE15295	Mercury toxicity in barley roots
4.2	96.3	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.9	95.8	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots
3.8	95.7	GSM382235	Root_Control1	GSE15295	Mercury toxicity in barley roots

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.6736.1.S1_at, orthologous to the query gene, Contig6860_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.95	99.4	GmaAffx.6736.1.S1_at	At5g66815	-	-	3e-1	At5g53710	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	71.7	Gma.7528.2.S1_at	At5g66815	-	-	3e-49	At4g16143	IMPA-2 (IMPORTIN ALPHA ISOFORM 2)	O.I.	H.G.	S.X.	Please select
0.47	66.6	GmaAffx.71007.1.S1_at	At5g66815	-	-	4e-35	At1g08190	vacuolar assembly protein, putative (VPS41)	O.I.	H.G.	S.X.	Please select
0.43	60.6	GmaAffx.68394.1.S1_at	At5g66815	-	-	3e+0	At5g03660	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	57.1	GmaAffx.43069.1.S1_at	At5g66815	-	-	4e-7	At1g14570	UBX domain-containing protein	O.I.	H.G.	S.X.	Please select
0.39	54.5	GmaAffx.82721.1.S1_at	At5g66815	-	-	6e-67	At3g05530	RPT5A (REGULATORY PARTICLE TRIPLE-A ATPASE 5A)	O.I.	H.G.	S.X.	Please select
0.38	53.3	GmaAffx.75704.1.S1_at	At5g66815	-	-	7e-1	At4g09940	avirulence-responsive family protein / avirulence induced gene (AIG1) family protein	O.I.	H.G.	S.X.	Please select
0.38	53.3	GmaAffx.29121.1.S1_at	At5g66815	-	-	1e+0	At4g17310	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	50.8	GmaAffx.93235.1.S1_s_at	At5g66815	-	-	2e-67	At5g54310	AGD5 (ARF-GAP domain 5)	O.I.	H.G.	S.X.	Please select
0.35	48.6	Gma.9706.3.S1_x_at	At5g66815	-	-	2e-5	At2g39840	TOPP4	O.I.	H.G.	S.X.	Please select
0.34	47.2	GmaAffx.87598.1.S1_at	At5g66815	-	-	8e-1	At2g13125	unknown protein	O.I.	H.G.	S.X.	Please select
0.34	47.2	GmaAffx.93437.1.S1_s_at	At5g66815	-	-	3e-23	At5g10780	-	O.I.	H.G.	S.X.	Please select
0.34	47.2	GmaAffx.478.5.S1_at	At5g66815	-	-	4e+0	At4g00467	-	O.I.	H.G.	S.X.	Please select
0.33	46.1	GmaAffx.84244.1.S1_at	At5g66815	-	-	1e-11	At5g53570	RabGAP/TBC domain-containing protein	O.I.	H.G.	S.X.	Please select
0.33	46.1	Gma.5720.2.S1_a_at	At5g66815	-	-	2e-5	At1g51200	zinc finger (AN1-like) family protein	O.I.	H.G.	S.X.	Please select
0.33	46.1	Gma.5135.2.S1_at	At5g66815	-	-	2e-42	At5g08500	transmembrane CLPTM1 family protein	O.I.	H.G.	S.X.	Please select
0.32	43.7	GmaAffx.56889.1.S1_s_at	At5g66815	-	-	3e-7	At3g59380	FTA (FARNESYLTRANSFERASE A)	O.I.	H.G.	S.X.	Please select
0.32	43.7	GmaAffx.82438.1.S1_at	At5g66815	-	-	2e-11	At5g60980	nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.30	40.4	GmaAffx.69087.1.S1_at	At5g66815	-	-	3e-22	At5g40490	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage