Co-expression analysis

Gene ID Contig6860_at
Gene name
Homology with ArabidopsisSimilar to At5g66815: unknown protein (HF=8e-4)
Module size 6 genes
NF 0.65
%ile 87.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6784.70.96Contig6860_atContig6860--8e-4At5g66815unknown proteinO.I.H.G.S.X.
0.7388.70.96Contig16423_atContig16423--2e+0At3g02580STE1 (STEROL 1)O.I.H.G.S.X.
0.7187.10.96Contig3332_atContig3332--2e-1At3g21215RNA-binding protein, putativeO.I.H.G.S.X.
0.5975.80.96rbaak4i15_s_atrbaak4i15--2e-6At5g08680ATP synthase beta chain, mitochondrial, putativeO.I.H.G.S.X.
0.5572.00.96HA06i14r_s_atHA06i14r--8e-4At5g15650RGP2 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 2)O.I.H.G.S.X.
0.4863.20.96Contig416_x_atContig416--5e-29At4g24190SHD (SHEPHERD)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.298.5GSM282031Malting_day1_Harrington_rep1GSE11200Expression data from malting barley seedsLink to GEO
5.397.4GSM382232Root_Hg1GSE15295Mercury toxicity in barley rootsLink to GEO
5.297.4GSM382234Root_Hg3GSE15295Mercury toxicity in barley rootsLink to GEO
5.197.3GSM238430Embryo 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.897.0GSM238431Embryo 25DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.796.9GSM382233Root_Hg2GSE15295Mercury toxicity in barley rootsLink to GEO
4.696.8GSM382237Root_Control3GSE15295Mercury toxicity in barley rootsLink to GEO
4.296.3GSM238432Embryo 0 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.995.8GSM382236Root_Control2GSE15295Mercury toxicity in barley rootsLink to GEO
3.895.7GSM382235Root_Control1GSE15295Mercury toxicity in barley rootsLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At5g66815, orthologous to the query gene, Contig6860_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
0.7284.8At5g66815836815unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.7083.5At1g01750839281ADF11 (ACTIN DEPOLYMERIZING FACTOR 11)F:actin binding;P:biological_process unknown;C:intracellular;MPOFBO.I.H.G.S.X.
0.6781.6At1g12560837813ATEXPA7 (ARABIDOPSIS THALIANA EXPANSIN A7)Member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Containing a conserved root hair-specific cis-element RHE. Expressed specifically in root hair cell.O.I.H.G.S.X.
0.6378.1At1g30850839969unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.6277.3At5g40860834087unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;POO.I.H.G.S.X.
0.6176.7At1g30870839971cationic peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOMO.I.H.G.S.X.
0.5873.8At3g12540820433unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;PMBOAO.I.H.G.S.X.
0.5773.8At2g34910818056unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.5773.8At5g58010835913basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFOO.I.H.G.S.X.
0.5773.8At4g00680828037ADF8 (ACTIN DEPOLYMERIZING FACTOR 8)F:actin binding;P:biological_process unknown;C:intracellular;MPOFBO.I.H.G.S.X.
0.5673.0At1g62980842601ATEXPA18 (ARABIDOPSIS THALIANA EXPANSIN A18)Alpha-expansin 18. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)O.I.H.G.S.X.
0.5166.3At1g27740839667basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PFOO.I.H.G.S.X.
0.5166.3At2g44110819017MLO15 (MILDEW RESISTANCE LOCUS O 15)A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO15 belongs to the clade II, with ATMLO13 and ATMLO15. The gene is expressed during early seedling growth, in root tips and flower (papillae, anthers and pollen grains), as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).O.I.H.G.S.X.
0.4862.5At3g10710820240pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFMO.I.H.G.S.X.
0.4862.5At4g09990826590unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POBO.I.H.G.S.X.
0.4761.2At5g49270834987SHV2 (SHAVEN 2)Involved in successfully establishing tip growth in root hairs.O.I.H.G.S.X.
0.4558.3At2g03720814899MRH6 (morphogenesis of root hair 6)Involved in root hair developmentO.I.H.G.S.X.
0.4558.3At2g47540819367pollen Ole e 1 allergen and extensin family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.4457.2At4g33730829515pathogenesis-related protein, putativeF:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOBO.I.H.G.S.X.
0.4355.3At5g35190833473proline-rich extensin-like family proteinF:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFPOBVAO.I.H.G.S.X.
0.4253.9At4g30320829155allergen V5/Tpx-1-related family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOBO.I.H.G.S.X.
0.4253.9At5g05500830433pollen Ole e 1 allergen and extensin family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.4152.4At2g18800816395XTH21 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 21)F:hydrolase activity, acting on glycosyl bonds, xyloglucan endotransglucosylase activity;P:primary root development, cell wall modification;C:endomembrane system, apoplast, cell wall;PFBOO.I.H.G.S.X.
0.4050.8At5g24313832499unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.3846.7At4g11210826723disease resistance-responsive family protein / dirigent family proteinF:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;PO.I.H.G.S.X.
0.3846.7At4g02270828083pollen Ole e 1 allergen and extensin family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.3643.6At1g30990839985major latex protein-related / MLP-relatedF:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;PO.I.H.G.S.X.
0.3439.8At1g18140838393LAC1 (Laccase 1)putative laccase, a member of laccase family of genes (with 17 members in Arabidopsis).O.I.H.G.S.X.
0.3439.8At1g53830841820ATPME2encodes a pectin methylesteraseO.I.H.G.S.X.
0.2319.3At5g56540835755AGP14 (ARABINOGALACTAN PROTEIN 14)Encodes arabinogalactan protein (AGP14).O.I.H.G.S.X.
0.146.8At5g46890834734protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.H.G.S.X.
0.135.8At3g50300824192transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFOO.I.H.G.S.X.
0.114.1At4g20210827768terpene synthase/cyclase family proteinF:lyase activity, magnesium ion binding;P:metabolic process;C:chloroplast;POO.I.H.G.S.X.
0.114.1At3g26610822270polygalacturonase, putative / pectinase, putativeF:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAVO.I.H.G.S.X.
0.103.4At5g10830830950embryo-abundant protein-relatedF:methyltransferase activity;P:metabolic process;C:cellular_component unknown;BPFMOAO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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