Co-expression analysis

Gene ID	Contig682_s_at
Gene name
Homology with Arabidopsis	Similar to At3g10410: scpl49 (serine carboxypeptidase-like 49) (HF=9e-13)
Module size	7 genes
NF	0.68
%ile	89.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	77.3	0.97	Contig682_s_at	Contig682	-	-	9e-13	At3g10410	scpl49 (serine carboxypeptidase-like 49)	O.I.	H.G.	S.X.	Please select
0.75	89.5	0.97	Contig30_s_at	Contig30	-	-	4e-19	At5g59690	histone H4	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.97	Contig4072_at	Contig4072	-	-	2e+0	At2g31610	40S ribosomal protein S3 (RPS3A)	O.I.	H.G.	S.X.	Please select
0.71	87.1	0.97	Contig3558_s_at	Contig3558	-	-	2e-15	At1g24510	T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.97	Contig21617_at	Contig21617	-	-	3e-1	At4g31470	pathogenesis-related protein, putative	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.97	rbah59f07_s_at	rbah59f07	-	-	4e+0	At3g24160	PMP (PUTATIVE TYPE 1 MEMBRANE PROTEIN)	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.97	HD13H12r_s_at	HD13H12r	-	-	2e-1	At3g28710	H+-transporting two-sector ATPase, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.3	98.8	GSM311254	hsp5_with_aphids_2	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
5.7	97.7	GSM311255	hsp5_with_aphids_3	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
4.8	97.0	GSM311205	28-4_with_aphids_2	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
4.3	96.4	GSM311261	kara_with_aphids_3	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
4.0	96.0	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.5	95.1	GSM130803	JA, biological rep1	GSE5605	Expression data from barley under salinity stress and JA treatment
3.4	94.8	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
3.4	94.8	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
3.3	94.6	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.2	94.3	GSM238438	Embryo 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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